[ome-devel] BF does not open some .stk file correctly

[Hadrien Mary]

Hi,

I may have a bug with some .stk file. I paste here the bug from
Fiji Bugzilla:

****
Note that I use a recent IJ/Fiji version (and the bug has also been noticed
with an older IJ version few months ago).

Some .stk files are not correctly detected by BF and IJ open them with two
axes (Z and T) while only one exist. Examples (axes order is T, Z, X, Y, C)
:

- file1.stk : real shape = (10, 1, 264, 268, 1), BF detected shape = (5, 2,
264, 268, 1)

- file2.stk (with several channels): real shape = (10, 1, 139, 224, 3), BF
detected shape = (5, 2, 139, 224, 3)

Both files have been saved from Metamorph after a z-projection (I bet the
issue comes from here).

They open well on different Metamorph versions and also tifffile.py lib
detects the correct shapes.

Both stk are in the attachment file called stk_files.zip
***

Original bug can be found here : http://fiji.sc/bugzilla/show_bug.cgi?id=868
(it has been closed since it seems to be a bug only related to BF).

You can find attachment file on the Fiji Bugzilla.

Best,

--
HadiM
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