[ome-devel] ome-io POM / omero-client version / demo.openmicroscopy.org

[Will Moore]

Hi Lee,

 The demo server was upgraded to 5.0.0 rc1 recently, so unfortunately you'll need the corresponding version 5 of the various bio-formats and OMERO.client jars
and these won't be compatible with OMERO 4.4.

 Regards,

   Will.


On 20 Feb 2014, at 14:39, Lee Kamentsky wrote:

> Hi all, hope this is the right list for this. I'm trying to connect to demo.openmicroscopy.org with loci.ome.io.OmeroReader in the ome-io project. The omero-client dependency is 4.3.1. Everything worked with the old demo URL, but I'm now getting the following stack trace:
> 
> Ice.MarshalException
>     reason = (null)
> 	at IceInternal.BasicStream.typeToClass(BasicStream.java:2403)
> 	at IceInternal.BasicStream.findClass(BasicStream.java:2320)
> 	at IceInternal.BasicStream.loadObjectFactory(BasicStream.java:2187)
> 	at IceInternal.BasicStream.readObject(BasicStream.java:1540)
> 	at omero.model.IObject.__read(IObject.java:465)
> 	at omero.model.Image.__read(Image.java:2455)
> 	at IceInternal.BasicStream.readObject(BasicStream.java:1590)
> 	at IceInternal.BasicStream.readPendingObjects(BasicStream.java:1739)
> 	at omero.api._GatewayDelM.getImage(_GatewayDelM.java:606)
> 	at omero.api.GatewayPrxHelper.getImage(GatewayPrxHelper.java:730)
> 	at omero.api.GatewayPrxHelper.getImage(GatewayPrxHelper.java:702)
> 	at loci.ome.io.OmeroReader.initFile(OmeroReader.java:314)
> 	at loci.formats.FormatReader.setId(FormatReader.java:1333)
> 
> I'm thinking that there's a version mismatch between the server and one of the .jar files. I'm using blitz.jar, common.jar, model-psql.jar and ice.jar from OMERO.clients-4.4.6 and ome-io's POM is an effective dependency of CellProfiler.
> 
> Hoping to pick some combination of jars that are compatible with as many servers as possible, but it's always possible for me to load different jars in CellProfiler based on a configuration setting or command-line switch.
> 
> --Lee
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> ome-devel mailing list
> ome-devel at lists.openmicroscopy.org.uk
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