[ome-devel] SPW ome-tiffs & how to proceed?

[Munro, Ian]

Thanks again Will 

That information helps a lot. Am I then correct  that if I were to get the binaryOnly option working , as suggested by Curtis, that 
the whole plate would download as it’s a file set?

Ian



On 18 Aug 2014, at 13:09, William Moore <will at lifesci.dundee.ac.uk> wrote:

> Hi Ian,
> 
> For "fixing downloads", it turns out that there's not much difference whether you have "1 big file for the whole plate"
> or if you've created the plate in OMERO via script/API.
> 
> In both cases, for all the selected images, we just lookup the fileset(s) and download all the linked files.
> 
> I guess the main question is what you want to be in the download:
> 
> If you have "1 big file for the whole plate" then you'll only be able to download the whole plate at a time,
> since there will be a single file-set for all the images.
> 
> If you import the images into OMERO separately, there will be a fileset for each image and you will
> just download the files you need for the selected images (with no SPW info).
> 
>  Will.
> 
> 
> 
> On 18 Aug 2014, at 12:57, "Munro, Ian" <i.munro at imperial.ac.uk> wrote:
> 
>> Thanks for the reply  Will
>> 
>> The final decision is down to the PIs I’m trying to gather information about our options.
>> Would it be easier to fix the download for this option than say having 1 big file for the whole plate?
>> 
>> 
>> Ian
>> 
>> 
>> On 18 Aug 2014, at 12:16, William Moore <will at lifesci.dundee.ac.uk> wrote:
>> 
>>> Hi Ian,
>>> 
>>> On 15 Aug 2014, at 15:24, "Munro, Ian" <i.munro at imperial.ac.uk> wrote:
>>>> 
>>>> 6)  Store data as ome-tiffs with no SPW xml but add this info in OMERO after import (either via dataset-to-plate script or the API)
>>>>     Estimated bloat. Unclear -ask OME team
>>>>     Pros. Might allow one file per FOV & work with future plate tools.
>>>>     Cons: Might not work - ask OME team
>>>>               Big software effort and end of project is approaching rapidly.
>>>> 
>>> 
>>> If you are happy to try this approach, I should be able to fix web so that you can download
>>> the original files for selected wells, just as if you'd selected multiple images in a Dataset.
>>> 
>>> Of course, the images you download will have no SPW data associated with them,
>>> but if that's OK for you, then let's give this a try…
>>> 
>>> 
>>> Will.
>>> 
>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
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>>> 
>> 
>