[ome-devel] open an ome-tiff behind the scenes?

[Melissa Linkert]

Hi Heinrich,

> I am trying to develop an ImageJ plugin that is supposed to operate on ome-tiff files selected by the user without necessarily showing up on screen.
> So, I am looking for a method that works similar to
> 
> MyImagePlus = Importer.read(FileName);
> 
> I guess something like this is around but I could not find it. The LOCI Bio-Formats Importer does not return an ImagePlus if I understood correctly..

It is possible to do this with Bio-Formats; an example is available here:

https://github.com/openmicroscopy/bioformats/blob/develop/components/loci-plugins/utils/Simple_Read.java

Regards,
-Melissa

On Tue, Sep 11, 2012 at 01:30:22PM +0000, Grabmayr, Heinrich wrote:
> Hi all,
> 
> I am trying to develop an ImageJ plugin that is supposed to operate on ome-tiff files selected by the user without necessarily showing up on screen.
> So, I am looking for a method that works similar to
> 
> MyImagePlus = Importer.read(FileName);
> 
> I guess something like this is around but I could not find it. The LOCI Bio-Formats Importer does not return an ImagePlus if I understood correctly..
> 
> Thanks in advance
>    Heinrich

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