[ome-devel] Fwd: BD Reader Datetimes of Images / Bio-formats

[Chris Allan]

Begin forwarded message:

> From: "Garbett, Shawn P" <shawn.garbett at Vanderbilt.Edu>
> Date: 24 February 2011 16:47:27 GMT
> To: "melissa at glencoesoftware.com" <melissa at glencoesoftware.com>, "ome-devel at lists.openmicroscopy.org.uk" <ome-devel-owner at lists.openmicroscopy.org.uk>
> Subject: Re: [ome-devel] BD Reader Datetimes of Images / Bio-formats
> 
> > MetadataTools.setDefaultCreationDate(store, tiffs[well][0], i);
> 
> Isn’t this only storing the first date? The goal is to have the timestamp for each image in the tiff stack, not just the first one. The problem is that sometimes an experiment is stopped and restarted, and the actual datetime stamp of each image is needed.
> 
> 
> On 2/24/11 7:45 AM, "Melissa Linkert" <melissa at glencoesoftware.com> wrote:
> 
> Hi Shawn,
> 
> Thank you very much for noticing this.  I've just committed a slightly
> modified version of your fix, so the latest trunk build of Bio-Formats
> should solve the problem.
> 
> You can see the relevant commit here:
> 
> http://git.openmicroscopy.org/?p=bioformats.git;a=blobdiff;f=components/bio-formats/src/loci/formats/in/BDReader.java;h=5c9dd968de4ca59e05b2f945246ec4b6c47202cc;hp=550e610e4672a178f6790479aea7bab07c77ef86;hb=96b63e2151d0333e2498d67ac350d5b77a75bdce;hpb=4b62c4f32e0bafc83e3ea5eb4ca98e82e946274d
> 
> > Also I noticed a request for more BD Pathway files. If you have any requests, I could send a set of DVDs.
> 
> What we're most in need of right now is data that has more than 2x2 fields, or
> that can be publicly distributed.  If you are willing and able to set either
> type of data, we would be most appreciative.
> 
> Regards,
> -Melissa
> 
> On Wed, Feb 23, 2011 at 03:06:13PM -0600, Garbett, Shawn P wrote:
> > I noticed some code that slipped through the cracks on this reader.
> >
> >       MetadataTools.setDefaultCreationDate(store, id, i);
> >
> >       int well = i / (fieldRows * fieldCols);
> >       int field = i % (fieldRows * fieldCols);
> >
> > Should instead be something like (so that each image preserves it capture time):
> >
> >       int well = i / (fieldRows * fieldCols);
> >       int field = i % (fieldRows * fieldCols);
> >
> >       MetadataTools.setDefaultCreationDate(store, tiffs[well][field], i);
> >
> > But I'm having trouble debug / compiling an importer with this right now.
> >
> > Also I noticed a request for more BD Pathway files. If you have any requests, I could send a set of DVDs.
> >
> > Shawn Garbett
> 
> > _______________________________________________
> > ome-devel mailing list
> > ome-devel at lists.openmicroscopy.org.uk
> > http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
> 
> 

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