[ome-devel] BD Reader Datetimes of Images / Bio-formats

[Melissa Linkert]

Hi Shawn,

Thank you very much for noticing this.  I've just committed a slightly
modified version of your fix, so the latest trunk build of Bio-Formats
should solve the problem.

You can see the relevant commit here:

http://git.openmicroscopy.org/?p=bioformats.git;a=blobdiff;f=components/bio-formats/src/loci/formats/in/BDReader.java;h=5c9dd968de4ca59e05b2f945246ec4b6c47202cc;hp=550e610e4672a178f6790479aea7bab07c77ef86;hb=96b63e2151d0333e2498d67ac350d5b77a75bdce;hpb=4b62c4f32e0bafc83e3ea5eb4ca98e82e946274d

> Also I noticed a request for more BD Pathway files. If you have any requests, I could send a set of DVDs.

What we're most in need of right now is data that has more than 2x2 fields, or
that can be publicly distributed.  If you are willing and able to set either
type of data, we would be most appreciative.

Regards,
-Melissa

On Wed, Feb 23, 2011 at 03:06:13PM -0600, Garbett, Shawn P wrote:
> I noticed some code that slipped through the cracks on this reader.
> 
>       MetadataTools.setDefaultCreationDate(store, id, i);
> 
>       int well = i / (fieldRows * fieldCols);
>       int field = i % (fieldRows * fieldCols);
> 
> Should instead be something like (so that each image preserves it capture time):
> 
>       int well = i / (fieldRows * fieldCols);
>       int field = i % (fieldRows * fieldCols);
> 
>       MetadataTools.setDefaultCreationDate(store, tiffs[well][field], i);
> 
> But I'm having trouble debug / compiling an importer with this right now.
> 
> Also I noticed a request for more BD Pathway files. If you have any requests, I could send a set of DVDs.
> 
> Shawn Garbett

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