[ome-devel] Leica SP5 Matrix Screener

Rubén Muñoz ruben.munoz at embl.de
Thu Sep 16 14:48:22 BST 2010


Hi Melissa, 

Thanks for the info. 
I have uploaded a dataset from the matrix screener: experiment--2010_03_30_13_35_06.zip

Although all the images are black or fuzzy, I could do more.

Regards,

Rubén

On Sep 16, 2010, at 3:26 PM, Melissa Linkert wrote:

> Hi Rubén,
> 
>> - Is there an importer?
> 
> Not yet.
> 
>> - How close do you think that these are to multi-file ome.tif?
> 
> It's difficult to say without seeing an example dataset.
> 
>> - Would be or worth to make an importer?
> 
> We can certainly add support for these datasets, but it may take a
> while.  Once you are able to upload a dataset, I will investigate and
> file a ticket as needed.
> 
>> I tried to upload the set to dev.loci.wisc.edu but I got an error.
> 
> You will need to change to the "incoming" directory after connecting.
> 
> Regards,
> -Melissa
> 
> On Thu, Sep 16, 2010 at 10:20:34AM +0200, Rubén Muñoz wrote:
>> Hi Melissa,
>> 
>> A time ago, I advanced that there's another Leica format. 
>> Well it's being generated by our Leica SP5 Matrix Screener.
>> 
>> The files are OME.TIF but they have no so complete OME-XML headers yet.
>> I will be working with this files, to get them close to the ones that bfconvert generates.
>> 
>> 
>> I wanted to ask some questions. 
>> - Is there an importer?
>> - How close do you think that these are to multi-file ome.tif?
>> - Would be or worth to make an importer?
>> 
>> I tried to upload the set to dev.loci.wisc.edu but I got an error.
>> 
>> uploading experiment--2010_03_30_13_35_06.zip to /experiment--2010_03_30_13_35_06.zip
>> Couldn't get handle: Permission denied
>> 
>> 



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