[ome-devel] Fwd: CellProfiler 2.0 OmeroLoadImages module

[Josh Moore]

Forwarding to the list. And once again, thanks for this, Bram!

~Josh.

Begin forwarded message:

> From: <b.gerritsen at nki.nl>
> Date: June 30, 2010 12:19:56 PM GMT+02:00
> To: <josh at glencoesoftware.com>
> Subject: CellProfiler 2.0 OmeroLoadImages module
> 
> Dear Josh,
> 
> A few days ago I uploaded a module called omeroloadimages.py to the user mailinglist. For brevity's sake I didn't go into detail on how to deploy the module. I hope it might give you ideas on how to support cellprofiler 2.0 in omero. See attachment for the module.
> 
> I have successfully tested this module using the trunk version (4.2) and omero beta 4.0.3. It was capable of loading a single image, a dataset, and a plate.
> 
> In case you're interested in testing it, here are a few instructions on getting it up and running in cellprofiler 2.0:
> 
> 1) create a "modules" folder in CELLPROFILER2_HOME/cellprofiler/modules/plugins/ and place the omeroloadimages.py file into it.
> 2) edit CELLPROFILER2_HOME/cellprofiler/preferences.py
> replace the line "return os.path.join(wx.StandardPaths.Get().GetUserDataDir(), 'plugins')"
> with "return 'CELLPROFILER2_HOME/cellprofiler/modules/plugins/modules/'"
> 3) set PYTHONPATH to OMERO_HOME/lib/python/
> 
> I hope it's not a problem that I e-mailed you separately like this. Please let me know if it helps.
> 
> Kind Regards,
> Bram
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