[ome-devel] OMERO ScanR import

[Melissa Linkert]

Hi Ruben,

> In other hand, we have multiC and multiD and time-lapse data from ScanR
> that want to provide (via FTP or CVS). And help to extend ScanrReader.java
> any possible way. I can provide information about ScanR, make test,
> suggestions and development.

We currently have very little ScanR data, so if you are willing to
provide additional datasets that would be very helpful.  I will send
you FTP server information off-list.

The two main things you can do to help with ScanR support are:

1) Testing with your own data, and reporting any bugs.

2) Reviewing the metadata displayed in OMERO, and verifying that it
represents all of the metadata that is present in ScanR files.

At a minimum, it would help to have a list of things that should be
fixed in the ScanR reader.  We would certainly welcome patches; if you
are planning on submitting patches to ScanrReader.java (or Bio-Formats
in general), I would recommend that you read through the developer
documentation at

http://loci.wisc.edu/ome/formats-library.html

...in particular, the "Other developer links" section.

If you have any questions, please feel free to ask!

Regards,
-Melissa

On Mon, Oct 19, 2009 at 2:38 AM, Rubén Muñoz <ruben.munoz at embl.de> wrote:
> Hello all,
>
> I'd like to introduce myself, my name is Ruben. We use OMERO at EMBL,
> specially since ScanR format is supported!!! It's great.
>
> While installing OMERO, I have taken a couple of notes, from
> [http://www.openmicroscopy.org/site/support/omero4/server/installation]
> that you may like to consider as changes.
>
> In other hand, we have multiC and multiD and time-lapse data from ScanR
> that want to provide (via FTP or CVS). And help to extend ScanrReader.java
> any possible way. I can provide information about ScanR, make test,
> suggestions and development.
>
> Thanks for your work.
>
> --
> Rubén Muñoz
> European Molecular Biology Laboratory
>
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