[ome-devel] Add a file annotation

[jburel]

Hi Matthias
Follow some code from the OMEROGateway (shoola code base)
You need to use the rawfile store
File file
RawFileStorePrx store = getRawFileService();
OriginalFile save = null;
Format f = (Format)  
getQueryService().findByString(Format.class.getName(), "value", format);
oFile = new OriginalFileI();
oFile.setName(omero.rtypes.rstring(file.getName()));
oFile.setPath(omero.rtypes.rstring(file.getAbsolutePath()));
oFile.setSize(omero.rtypes.rlong(file.length()));
oFile.setSha1(omero.rtypes.rstring("pending"));
oFile.setFormat(f);
save = (OriginalFile) saveAndReturnObject(oFile, null);
store.setFileId(save.getId().getValue());
byte[] buf = new byte[INC];
FileInputStream stream = null;
try {
			stream = new FileInputStream(file);
			long pos = 0;
			int rlen;
			ByteBuffer bbuf;
			while ((rlen = stream.read(buf)) > 0) {
				store.write(buf, pos, rlen);
				pos += rlen;
				bbuf = ByteBuffer.wrap(buf);
				bbuf.limit(rlen);
			}
			stream.close();
		} catch (Exception e) {
			try {
				if (stream != null) stream.close();
			} catch (Exception ex) {}
			
			throw new DSAccessException("Cannot upload the file with path " +
					file.getAbsolutePath(), e);
		}
Then you link the original file to the file annotation.
FileAnnotation fa;
fa.setFile(of)
and save the file annotation

Regards
jmarie
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