[ome-devel] Problem with OMERO.importer and XP
Brian Loranger
brian.loranger at lifesci.dundee.ac.uk
Fri Aug 14 13:03:13 BST 2009
Hi Olivier,
I've not seen this error before and we have several folks here using
the importer with the latest version of java. The error suggests it's
something in the underlying java native library and I'm wondering if
you have a corrupted java install. Try reinstalling it from the Sun
Java site and see if that helps.
Cheers,
Brian
On 14 Aug 2009, at 08:59, Olivier Arnaiz <arnaiz at cgm.cnrs-gif.fr> wrote:
> Hello,
>
> I have this error when I execute OMERO.importer (v4) on a Windows XP
> computer.
> OMERO.insight works on this machine and all the clients work on a
> MacOS X OS.
>
> Do you have any idea ?
>
> Thanks
> Olivier
>
> #
> # A fatal error has been detected by the Java Runtime Environment:
> #
> # EXCEPTION_ACCESS_VIOLATION (0xc0000005) at pc=0x6d03920c,
> pid=1084, tid=3848
> #
> # JRE version: 6.0_15-b03
> # Java VM: Java HotSpot(TM) Client VM (14.1-b02 mixed mode windows-
> x86 )
> # Problematic frame:
> # C [awt.dll+0x3920c]
> #
> # If you would like to submit a bug report, please visit:
> # http://java.sun.com/webapps/bugreport/crash.jsp
> # The crash happened outside the Java Virtual Machine in native code.
> # See problematic frame for where to report the bug.
> #
>
> --------------- T H R E A D ---------------
>
> Current thread (0x4a0e6c00): JavaThread "AWT-Windows" daemon
> [_thread_in_native, id=3848, stack(0x4a550000,0x4a750000)]
>
> siginfo: ExceptionCode=0xc0000005, writing address 0xe137e41c
>
> Registers:
> EAX=0x036a08cc, EBX=0x00000100, ECX=0xe137e41c, EDX=0x00000100
> ESP=0x4a74f294, EBP=0xff000000, ESI=0x0000049c, EDI=0x00000000
> EIP=0x6d03920c, EFLAGS=0x00010286
>
> Top of Stack: (sp=0x4a74f294)
> 0x4a74f294: 4a74f2f0 00000100 4a74f374 00000100
> 0x4a74f2a4: 6d0aac1e 036a08cc e137e41c 00000100
> 0x4a74f2b4: 00000100 4a74f4f0 4a74f2f0 00000000
> 0x4a74f2c4: 00000000 00000100 4a7aeef0 00000100
> 0x4a74f2d4: 4ebff8a0 00000400 e137e41c 00000000
> 0x4a74f2e4: 00000000 00000100 00000100 00000000
> 0x4a74f2f4: 00000000 00000100 00000100 00000000
> 0x4a74f304: 00000000 00000004 00000400 00000000
>
> Instructions: (pc=0x6d03920c)
> 0x6d0391fc: 00 00 00 00 8b 54 24 1c 8b 28 81 cd 00 00 00 ff
> 0x6d03920c: 89 29 83 c0 04 83 c1 04 4a 75 ed 03 c6 03 cf 4b
>
>
> Stack: [0x4a550000,0x4a750000], sp=0x4a74f294, free space=2044k
> Native frames: (J=compiled Java code, j=interpreted, Vv=VM code,
> C=native code)
> C [awt.dll+0x3920c]
>
> [error occurred during error reporting (printing native stack), id
> 0xc0000005]
>
> Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
> j sun.awt.windows.WToolkit.eventLoop()V+0
> j sun.awt.windows.WToolkit.run()V+69
> j java.lang.Thread.run()V+11
> v ~StubRoutines::call_stub
>
> --------------- P R O C E S S ---------------
>
> Java Threads: ( => current thread )
> 0x48e94400 JavaThread "D3D Screen Updater" daemon
> [_thread_blocked, id=1464, stack(0x50580000,0x50780000)]
> 0x4a033400 JavaThread "Image Fetcher 1" daemon [_thread_blocked,
> id=1452, stack(0x50380000,0x50580000)]
> 0x4a957400 JavaThread "HSQLDB Timer @1e88b35" daemon
> [_thread_blocked, id=1192, stack(0x50180000,0x50380000)]
> 0x4a8ba000 JavaThread "Swing-Shell" daemon [_thread_blocked,
> id=3940, stack(0x4f660000,0x4f860000)]
> 0x4a7e8000 JavaThread "AWT-EventQueue-0" [_thread_in_native,
> id=3876, stack(0x4f430000,0x4f630000)]
> 0x4a7ef800 JavaThread "Image Fetcher 0" daemon [_thread_blocked,
> id=3860, stack(0x4f230000,0x4f430000)]
> 0x4a7d7000 JavaThread "Keep-Alive-Timer" daemon [_thread_blocked,
> id=3856, stack(0x4f030000,0x4f230000)]
> =>0x4a0e6c00 JavaThread "AWT-Windows" daemon [_thread_in_native,
> id=3848, stack(0x4a550000,0x4a750000)]
> 0x4a0be000 JavaThread "AWT-Shutdown" [_thread_blocked, id=2540,
> stack(0x4a350000,0x4a550000)]
> 0x4a0c6800 JavaThread "Java2D Disposer" daemon [_thread_blocked,
> id=3844, stack(0x4a150000,0x4a350000)]
> 0x48e92000 JavaThread "Low Memory Detector" daemon
> [_thread_blocked, id=3808, stack(0x49b00000,0x49d00000)]
> 0x48e8c400 JavaThread "CompilerThread0" daemon [_thread_blocked,
> id=3804, stack(0x49900000,0x49b00000)]
> 0x48e8ac00 JavaThread "Attach Listener" daemon [_thread_blocked,
> id=3792, stack(0x49700000,0x49900000)]
> 0x48e89800 JavaThread "Signal Dispatcher" daemon [_thread_blocked,
> id=3788, stack(0x49500000,0x49700000)]
> 0x48e79000 JavaThread "Finalizer" daemon [_thread_blocked,
> id=3752, stack(0x49300000,0x49500000)]
> 0x48e74400 JavaThread "Reference Handler" daemon [_thread_blocked,
> id=3756, stack(0x49100000,0x49300000)]
> 0x00ca7c00 JavaThread "main" [_thread_blocked, id=3716, stack
> (0x00030000,0x00230000)]
>
> Other Threads:
> 0x48e71400 VMThread [stack: 0x48f00000,0x49100000] [id=3760]
> 0x48e9c800 WatcherThread [stack: 0x49d00000,0x49f00000] [id=3812]
>
> VM state:not at safepoint (normal execution)
>
> VM Mutex/Monitor currently owned by a thread: None
>
> Heap
> def new generation total 9088K, used 7323K [0x03200000,
> 0x03bd0000, 0x080c0000)
> eden space 8128K, 78% used [0x03200000, 0x03836f30, 0x039f0000)
> from space 960K, 100% used [0x03ae0000, 0x03bd0000, 0x03bd0000)
> to space 960K, 0% used [0x039f0000, 0x039f0000, 0x03ae0000)
> tenured generation total 121024K, used 4368K [0x080c0000,
> 0x0f6f0000, 0x43200000)
> the space 121024K, 3% used [0x080c0000, 0x08504198, 0x08504200,
> 0x0f6f0000)
> compacting perm gen total 15616K, used 15615K [0x43200000, 0x44140000
> , 0x47200000)
> the space 15616K, 99% used [0x43200000, 0x4413fd58, 0x4413fe00, 0x44140000
> )
> No shared spaces configured.
>
> Dynamic libraries:
> 0x00400000 - 0x00477f9c C:\Documents and Settings\Mr Cohen\Bureau
> \OMERO.clients-Beta4.0.3.win\OMERO.clients\OMERO.importer.exe
> 0x7c910000 - 0x7c9c9000 C:\WINDOWS\system32\ntdll.dll
> 0x7c800000 - 0x7c906000 C:\WINDOWS\system32\kernel32.dll
> 0x77da0000 - 0x77e4c000 C:\WINDOWS\system32\ADVAPI32.DLL
> 0x77e50000 - 0x77ee2000 C:\WINDOWS\system32\RPCRT4.dll
> 0x77fc0000 - 0x77fd1000 C:\WINDOWS\system32\Secur32.dll
> 0x77be0000 - 0x77c38000 C:\WINDOWS\system32\msvcrt.dll
> 0x7c9d0000 - 0x7d1f5000 C:\WINDOWS\system32\SHELL32.DLL
> 0x77ef0000 - 0x77f39000 C:\WINDOWS\system32\GDI32.dll
> 0x7e390000 - 0x7e421000 C:\WINDOWS\system32\USER32.dll
> 0x77f40000 - 0x77fb6000 C:\WINDOWS\system32\SHLWAPI.dll
> 0x76320000 - 0x7633d000 C:\WINDOWS\system32\IMM32.DLL
> 0x77390000 - 0x77493000 C:\WINDOWS\WinSxS
> \x86_Microsoft.Windows.Common-
> Controls_6595b64144ccf1df_6.0.2600.5512_x-ww_35d4ce83\comctl32.dll
> 0x58b50000 - 0x58bea000 C:\WINDOWS\system32\comctl32.dll
> 0x6d800000 - 0x6da8b000 C:\Program Files\Java\jre6\bin\client\jvm.dll
> 0x76ae0000 - 0x76b0f000 C:\WINDOWS\system32\WINMM.dll
> 0x7c340000 - 0x7c396000 C:\WINDOWS\system32\MSVCR71.dll
> 0x6d7b0000 - 0x6d7bc000 C:\Program Files\Java\jre6\bin\verify.dll
> 0x6d330000 - 0x6d34f000 C:\Program Files\Java\jre6\bin\java.dll
> 0x6d290000 - 0x6d298000 C:\Program Files\Java\jre6\bin\hpi.dll
> 0x76ba0000 - 0x76bab000 C:\WINDOWS\system32\PSAPI.DLL
> 0x6d7f0000 - 0x6d7ff000 C:\Program Files\Java\jre6\bin\zip.dll
> 0x6d000000 - 0x6d14a000 C:\Program Files\Java\jre6\bin\awt.dll
> 0x72f50000 - 0x72f76000 C:\WINDOWS\system32\WINSPOOL.DRV
> 0x774a0000 - 0x775dd000 C:\WINDOWS\system32\ole32.dll
> 0x5b090000 - 0x5b0c8000 C:\WINDOWS\system32\uxtheme.dll
> 0x74690000 - 0x746dc000 C:\WINDOWS\system32\MSCTF.dll
> 0x75140000 - 0x7516e000 C:\WINDOWS\system32\msctfime.ime
> 0x6d230000 - 0x6d284000 C:\Program Files\Java\jre6\bin
> \fontmanager.dll
> 0x4fcf0000 - 0x4fe96000 C:\WINDOWS\system32\d3d9.dll
> 0x6de60000 - 0x6de66000 C:\WINDOWS\system32\d3d8thk.dll
> 0x77bd0000 - 0x77bd8000 C:\WINDOWS\system32\VERSION.dll
> 0x6d610000 - 0x6d623000 C:\Program Files\Java\jre6\bin\net.dll
> 0x719f0000 - 0x71a07000 C:\WINDOWS\system32\WS2_32.dll
> 0x719e0000 - 0x719e8000 C:\WINDOWS\system32\WS2HELP.dll
> 0x6d630000 - 0x6d639000 C:\Program Files\Java\jre6\bin\nio.dll
> 0x71990000 - 0x719d0000 C:\WINDOWS\System32\mswsock.dll
> 0x76ed0000 - 0x76ef7000 C:\WINDOWS\system32\DNSAPI.dll
> 0x76f60000 - 0x76f68000 C:\WINDOWS\System32\winrnr.dll
> 0x76f10000 - 0x76f3d000 C:\WINDOWS\system32\WLDAP32.dll
> 0x76f70000 - 0x76f76000 C:\WINDOWS\system32\rasadhlp.dll
> 0x4edd0000 - 0x4ee29000 C:\WINDOWS\system32\hnetcfg.dll
> 0x719d0000 - 0x719d8000 C:\WINDOWS\System32\wshtcpip.dll
> 0x778e0000 - 0x779d8000 C:\WINDOWS\system32\SETUPAPI.dll
> 0x6fee0000 - 0x6ff35000 C:\WINDOWS\system32\netapi32.dll
> 0x77b50000 - 0x77b72000 C:\WINDOWS\system32\appHelp.dll
> 0x76f80000 - 0x76fff000 C:\WINDOWS\system32\CLBCATQ.DLL
> 0x77000000 - 0x770d4000 C:\WINDOWS\system32\COMRes.dll
> 0x770e0000 - 0x7716b000 C:\WINDOWS\system32\OLEAUT32.dll
> 0x765b0000 - 0x76606000 C:\WINDOWS\System32\cscui.dll
> 0x76590000 - 0x765ad000 C:\WINDOWS\System32\CSCDLL.dll
> 0x4fea0000 - 0x5017a000 C:\WINDOWS\system32\xpsp2res.dll
> 0x71a60000 - 0x71a72000 C:\WINDOWS\system32\MPR.dll
> 0x75ef0000 - 0x75ef7000 C:\WINDOWS\System32\drprov.dll
> 0x71b70000 - 0x71b7e000 C:\WINDOWS\System32\ntlanman.dll
> 0x71c30000 - 0x71c47000 C:\WINDOWS\System32\NETUI0.dll
> 0x71bf0000 - 0x71c30000 C:\WINDOWS\System32\NETUI1.dll
> 0x71be0000 - 0x71be7000 C:\WINDOWS\System32\NETRAP.dll
> 0x71b50000 - 0x71b63000 C:\WINDOWS\System32\SAMLIB.dll
> 0x75f00000 - 0x75f0a000 C:\WINDOWS\System32\davclnt.dll
> 0x73cc0000 - 0x73cd3000 C:\WINDOWS\system32\shgina.dll
> 0x75900000 - 0x759fa000 C:\WINDOWS\system32\MSGINA.dll
> 0x74730000 - 0x7476d000 C:\WINDOWS\system32\ODBC32.dll
> 0x76340000 - 0x7638a000 C:\WINDOWS\system32\comdlg32.dll
> 0x76960000 - 0x76a16000 C:\WINDOWS\system32\USERENV.dll
> 0x762f0000 - 0x76300000 C:\WINDOWS\system32\WINSTA.dll
> 0x4fb70000 - 0x4fb88000 C:\WINDOWS\system32\odbcint.dll
> 0x76920000 - 0x76928000 C:\WINDOWS\system32\LINKINFO.dll
> 0x76930000 - 0x76956000 C:\WINDOWS\system32\ntshrui.dll
> 0x76ac0000 - 0x76ad1000 C:\WINDOWS\system32\ATL.DLL
>
> VM Arguments:
> jvm_args: -Xmx1073741824 -Xms134217728
> java_command: <unknown>
> Launcher Type: generic
>
> Environment Variables:
> PATH=C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:
> \Program Files\ATI Technologies\ATI Control Panel;C:\Program Files
> \Microsoft SQL Server\80\Tools\Binn\
> USERNAME=Mr Cohen
> OS=Windows_NT
> PROCESSOR_IDENTIFIER=x86 Family 15 Model 4 Stepping 3, GenuineIntel
>
>
>
> --------------- S Y S T E M ---------------
>
> OS: Windows XP Build 2600 Service Pack 3
>
> CPU:total 2 (1 cores per cpu, 2 threads per core) family 15 model 4
> stepping 3, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ht
>
> Memory: 4k page, physical 1046596k(517848k free), swap 2518008k
> (2004584k free)
>
> vm_info: Java HotSpot(TM) Client VM (14.1-b02) for windows-x86 JRE
> (1.6.0_15-b03), built on Jul 25 2009 01:22:46 by "java_re" with MS VC
> ++ 7.1
>
> time: Fri Aug 14 09:33:51 2009
> elapsed time: 7 seconds
>
>
> --
> Olivier Arnaiz
> CGM-CNRS
> 91198 Gif-sur-Yvette
> 01 69 82 43 75
>
> ParameciumDB:
> http://paramecium.cgm.cnrs-gif.fr/
>
>
>
>
> _______________________________________________
> ome-devel mailing list
> ome-devel at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
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