[ome-devel] Customising OMERO client software

Woodbridge, Mark R m.woodbridge at imperial.ac.uk
Thu Jun 12 12:49:35 BST 2008


Hi Josh,
 
> If you happen to still know, what was the problem you had 
> with the with the no.ice build? I just tested:
> 
> ant clean cleantools quick build dist
> 
> with no.ice=true.

I might be misunderstanding the no.ice setting, but in order to build
the OmeroImporter project in Eclipse I first need to run the withtools
task (i.e. java omero build dist withtools). Even with the no.ice
setting, the withtools task spends a long time building cpp files which
I don't need for OmeroImporter. But like I say, this isn't a problem
because it only needs to be run once.
 
>  > I was concerned that I would be missing any  > 
> OMERO-specific patches though. 
> 
> Possibly. I'm attaching a patch here, which should work. 
> Brian, do you see any problems with this? Would Mark also 
> need a patch for the importer?

Thanks. I've checked out revision 3935 of the LOCI version of
bio-formats, and applied your patch. It failed to compile until I added
a no-op setChannelGlobalMinMax(...) to:

loci.formats.meta.AggregateMetadata
loci.formats.ome.OMEXML2003FCMetadata
loci.formats.ome.OMEXML200706Metadata

Anyway, I then made my changes, built it and replaced
lib/repository/bio-formats-r3935-patched.jar. It works fine so far.

Thanks again for your help,

Mark.


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