[ome-devel] Install failure loading Experiment.ome

[McCaughey, Michael J]

Well, it has the potential to be a big problem here. 

Without the ability to put OMEIS on a share, my OME useage is limited by my local disk capacity. I have a backlog of >10TB of images to import, but the server has nowhere near enough capacity, so I've been trying to use an NFS share from a NAS box that I have 64TB on.

The IT people have not been able to make CIFS work with *nix clients on the NAS box (don't even start me on that), so I haven't been able to try it. Is anyone putting OMEIS out on a cifs share?

Mike

Michael J. McCaughey, PhD
Molecular Physiology and Biophysics
U9203 MRBIII
6-6175



-----Original Message-----
From: Ilya Goldberg [mailto:igg at nih.gov]
Sent: Fri 10/6/2006 8:19 AM
To: McCaughey, Michael J
Subject: Re: [ome-devel] Install failure loading Experiment.ome
 
Aha!
Its the dread nfs share that I bet doesn't support fully posix- 
compliant file-locking.  There's discussion of this on-line, along  
with some suggested fixes (its not OME-specific).  I don't know how  
big a problem this is generally speaking.  Anyone?

-Ilya


On Oct 2, 2006, at 4:45 PM, McCaughey, Michael J wrote:

> The problem seems to be related to installing OME/OMEIS on a nfs- 
> mounted share.
> I can install perfectly well locally, but installs with only the  
> Base OME directory and Base OMEIS directory changed to a directory  
> on the share fail as described. The OME/OMEIS directories are  
> created with correct permissions by install.pl, and are populated.  
> The share itself is owned by root with world rwx (777) permissions,  
> so it doesn't *appear* to be a permission issue.
>
> Any suggestions anyone?
>
> Mike
>
> Michael J. McCaughey, PhD
> Molecular Physiology and Biophysics
> U9203 MRBIII
> 6-6175
>
>
>
> -----Original Message-----
> From: ome-devel-bounces at lists.openmicroscopy.org.uk on behalf of  
> Chris Allan
> Sent: Sun 9/17/2006 4:57 PM
> To: ome-devel at lists.openmicroscopy.org.uk
> Subject: Re: [ome-devel] Install failure loading Experiment.ome
>
>
> On 15 Sep 2006, at 15:51, McCaughey, Michael J wrote:
>
> ...snip...
>>
>>
>> Apache's error log gives:
>> [Fri Sep 15 08:25:21 2006] [error] [client 127.0.0.1] In PID 28882,
>> Error callin
>> g OMEIS: Method parameter missing
>> [Fri Sep 15 08:27:02 2006] [error] [client 127.0.0.1] In PID 30644,
>> Error calling OMEIS:
>> [Fri Sep 15 08:27:02 2006] [error] [client 127.0.0.1] Method
>> parameter missing
>> [Fri Sep 15 08:27:02 2006] [error] [client 127.0.0.1]
>> [Fri Sep 15 08:27:02 2006] [error] [client 127.0.0.1] Premature end
>> of script headers: omeis
>>
>> Anybody seen this before?
> Ugh, yes. That's likely an OMEIS segfault.
>
> No idea what might be causing it unfortunately and getting cores out
> of Apache can be a bit tricky.
>
> Ciao.
>
> -Chris
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> ome-devel at lists.openmicroscopy.org.uk
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>
>
> Michael J. McCaughey, PhD
> Molecular Physiology and Biophysics
> U9203 MRBIII
> 6-6175
>
> _______________________________________________
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> ome-devel at lists.openmicroscopy.org.uk
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