[ome-devel] Cvs install broken

[kris]

I also ran into the omeis problem, but a make clean worked
to clear that up.

My DBD::Pg is 1.45 so I will be downgrading.  However, on CPAN I notice
that there is 1.47 from 19 Mar 06, while 1.45 is from Feb 06.
The version 1.32 mentioned is from Feb 04  and 1.22 doesn't
seem available anymore.

Postgresql is 7.4


On Wed, 2006-05-03 at 19:24 -0400, Ilya Goldberg wrote:
> This one is probably my fault.  I don't know why it wants a  
> Makefile.in in omeis/t/, but not for any other sub-directory.
> You can cd src/C/omeis, then run ./autogen.sh, then make, and it  
> should work.
> You did your update with the -dP flags?  These create and prune  
> directories as needed.  A fresh checkout should have worked also.
> 
> The DB thing is a new one.  What version of postgres and DBD::Pg are  
> you using?
> -I
> 
> On May 3, 2006, at 11:46 AM, Curtis Rueden wrote:
> 
> > Hi Kris,
> >
> > I've seen similar DBD::Pg::db errors before. It seems various versions
> > of DBD::Pg (including some of the latest ones) are broken with respect
> > to OME. On our Debian systems, DBD::Pg 1.32 definitely works (I am
> > fairly sure 1.22 also works). Alternately, you can refrain from
> > installing DBD::Pg manually or with your package manager, and instead
> > allow the OME installer to download and install its preferred version,
> > which I believe should work.
> >
> > I was planning to test my claims with the latest OME from CVS  
> > today, but
> > ran into an error of my own much earlier (included below, in case  
> > anyone
> > else knows what's wrong).
> >
> > -Curtis
> >
> > -------------------
> >  Core Binary Setup
> > -------------------
> >
> > (All verbose information logged in /var/tmp/OME/install/ 
> > BinaryBuilds.log)
> >
> > Installing OMEIS
> >   \_ Configuring [FAILURE].
> >
> >
> > Errors executing task: Unable to configure module, see  
> > BinaryBuilds.log
> > for details. at (eval 36) line 1
> >
> >  at ./install.pl line 81
> >         main::run_tasks() called at ./install.pl line 265
> >
> > -------------------
> > curtis at skyking:~/OME$ tail /var/tmp/OME/install/BinaryBuilds.log
> >  checking for strdup... yes
> >  checking for strerror... yes
> >  checking for strstr... yes
> >  configure: creating ./config.status
> >  config.status: creating Makefile
> >  config.status: creating zoom/Makefile
> >  config.status: creating zoom/lib/Makefile
> >  config.status: error: cannot find input file: t/Makefile.in
> > "
> >
> >
> > kris wrote:
> >
> >> Database woes when installing from CVS...
> >>
> >>
> >> ---CUT----
> >>
> >> # cat /var/tmp/OME/install/CoreDatabaseTablesTask.log
> >> Creating OME PostgreSQL SUPERUSER (ome)
> >> ERROR LOADING CLASS "OME::LookupTable" -- OUTPUT: "DBD::Pg::db do
> >> failed: ERROR:  could not determine data type of parameter $1
> >> "
> >>
> >> --------------------
> >> Database Bootstrap
> >> --------------------
> >>
> >> (All verbose information logged
> >> in /var/tmp/OME/install/CoreDatabaseTablesTask.log)
> >>
> >> Finding DB configuration in installation environment [FOUND  
> >> EXISTING].
> >> Database connection information
> >> N.B.:  The database host must already be installed and running.
> >> It must already be configured for accepting the connection
> >> specified here, or a superuser connection from user "postgres".
> >>   Database Delegate Class: OME::Database::PostgresDelegate
> >>             Database Name: ome
> >>                      Host: undefined (local)
> >>                      Port: undefined (default)
> >> Username for DB connection: undefined (process owner)
> >>
> >> Are these values correct ? [y/n]:
> >> Creating OME PostgreSQL SUPERUSER (ome)[SUCCESS].
> >> Creating Apache PostgreSQL SUPERUSER (www-data)[SUCCESS].
> >> Creating Admin PostgreSQL SUPERUSER (kgk)[SUCCESS].
> >> Checking database
> >> Creating PostgreSQL database ome...     [Done.]
> >> Fixing OID/INTEGER compatability bug...WARNING:  changing return  
> >> type of
> >> function plpgsql_call_handler from "opaque" to "language_handler"
> >>        [Done.]
> >> Loading the database schema
> >>  \__ OME::LookupTable NOTICE:  CREATE TABLE / PRIMARY KEY will create
> >> implicit index "lookup_tables_pkey" for table "lookup_tables"
> >> DBD::Pg::db do failed: ERROR:  could not determine data type of
> >> parameter $1
> >> [FAILURE].
> >>
> >>
> >> Errors executing task: Error loading class "OME::LookupTable", see
> >> CoreDatabaseTablesTask.log details. at (eval 202) line 1
> >>
> >> at install.pl line 81
> >>        main::run_tasks() called at install.pl line 265
> >> # Looks like your test died before it could output anything.
> >> arno:/home/kgk/work/ome/OME-CVS#
> >> m /var/tmp/OME/install/CoreDatabaseTablesTask.log
> >>
> >>
> >>
> >
> > _______________________________________________
> > ome-devel mailing list
> > ome-devel at lists.openmicroscopy.org.uk
> > http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel
> >
-- 
Kristian Kvilekval
kris at cs.ucsb.edu  http://www.cs.ucsb.edu/~kris w:805-893-2526 h:504-9756