[ome-devel] OME cvs install, error at Repostitory.ome

august august at develop.ment.org
Tue Nov 1 22:47:05 GMT 2005



Hello all,

I have a request for a small change in the installation method and
question about an error message I am getting.

About the install method, do you think it would be possible to have the
installer read the defaults from a simple text file?  It becomes really
impractical when you have to change a lot of the default install locations
and such - this is especially so when you are having troubles getting it
installed and must run the installer many times.

Now, on to my install problem.  I get pretty far in the installer and it
seems to load up the ome stuff in the postgres and all is well, but it
chokes here:
------------------------------------------------------------------
What is the URL of the OME Image server (omeis) ?
[http://hammer/cgi-bin/omeis]: http://hammer.ece.ucsb.edu/cgi-bin/omeis
Checking OMEIS repository [SUCCESS].
Importing bootstrap XML
  \__
/cluster/home/august/OME/src/xml/OME/Annotations/InstallationModule.ome
OME::Tasks::LSIDManager::getRemoteObject() is not implemented. at
/cluster/home/august/OME/src/perl2/OME/ImportExport/ModuleImport.pm line
183
[SUCCESS].
  \__ /cluster/home/august/OME/src/xml/OME/Core/Experimenter.ome
[SUCCESS].
  \__ /cluster/home/august/OME/src/xml/OME/Core/OMEIS/Repository.ome
[FAILURE].


Errors executing task: Error loading XML file
"/cluster/home/august/OME/src/xml/OME/Core/OMEIS/Repository.ome", see
CoreDatabaseTablesTask.log details. at (eval 191) line 1

        main::run_tasks() called at install.pl line 263
# Looks like your test died before it could output anything.
-------------------------------------------------------------

/cluster/home/august/OME/src/xml/OME/Core/OMEIS/Repository.ome looks fine
and is the same XML file that has been used on another successful
installation of OME on another machine.  I look at the
CoreDatabaseTablesTask.log  and it tells me:

------------------------------------------------------------

Repository is configured correctly
SUCCESS LOADING XML FILE
"/cluster/home/august/OME/src/xml/OME/Annotations/InstallationModule.ome"
SUCCESS LOADING XML FILE
"/cluster/home/august/OME/src/xml/OME/Core/Experimenter.ome"
ERROR LOADING XML FILE
"/cluster/home/august/OME/src/xml/OME/Core/OMEIS/Repository.ome" --
OUTPUT: "500 EOF when chunk header expected
        OME::Image::Server::__callOMEIS('OME::Image::Server', 'Method',
'UploadFile', 'File',
'/cluster/home/august/OME/src/xml/OME/Core/OMEIS/Repository.ome') called
at /cluster/home/august/OME/src/perl2/OME/Image/Server.pm line 1060
        OME::Image::Server::uploadFile('OME::Image::Server',
'/cluster/home/august/OME/src/xml/OME/Core/OMEIS/Repository.ome') called
at /cluster/home/august/OME/src/perl2/OME/Image/Server/File.pm line 128
        OME::Image::Server::File::upload('OME::Image::Server::File',
'/cluster/home/august/OME/src/xml/OME/Core/OMEIS/Repository.ome') called
at /cluster/home/august/OME/src/perl2/OME/Tasks/OMEImport.pm line 138

OME::Tasks::OMEImport::importFile('OME::Tasks::OMEImport=HASH(0x998abc4)',
'/cluster/home/august/OME/src/xml/OME/Core/OMEIS/Repository.ome',
'NoDuplicates', 1, 'IgnoreAlterTableErrors', 1) called at
/cluster/home/august/OME/src/perl2/OME/Install/CoreDatabaseTablesTask.pm
line 949
        eval {...} called at
/cluster/home/august/OME/src/perl2/OME/Install/CoreDatabaseTablesTask.pm
line 948

OME::Install::CoreDatabaseTablesTask::load_xml_bootstrap('OME::Session=HASH(0x826aa44)')
called at
/cluster/home/august/OME/src/perl2/OME/Install/CoreDatabaseTablesTask.pm
line 1396
        OME::Install::CoreDatabaseTablesTask::execute() called at (eval
191) line 1
        eval 'OME::Install::CoreDatabaseTablesTask::execute()
;' called at install.pl line 79
        main::run_tasks() called at install.pl line 263
"
----------------------------------------------------------------------


any ideas?

thanks!  -august.


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