[ome-devel] Re: Import Error

Tony Scelfo scelfo at gmail.com
Thu Aug 11 22:28:32 BST 2005


As a followup, Tomasz suggested that I upgrade to the CVS version. 
When I run the installer, it fails with the following error:

------------------------
 Bootstrapping Database
------------------------

  \__ Creating repository object

What is the URL of the OME Image server (omeis) ?
[http://ome-sorger1.mit.edu/cgi-bin/omeis]:
Checking OMEIS repository [SUCCESS].
Importing bootstrap XML
  \__ /home/tonys/ome_cvs/OME/src/xml/OME/Annotations/InstallationModule.ome
OME::Tasks::LSIDManager::getRemoteObject() is not implemented. at
/home/tonys/ome_cvs/OME/src/perl2/OME/ImportExport/ModuleImport.pm
line 222
DBD::Pg::st execute failed: ERROR:  syntax error at or near "$1" at
character 173

Something seems related here since both errors are in DBD::Pg::st near
"$1"... granted that the errors occur in different lines.

I am running OME on a debian installation.

Tony

On 8/11/05, Tony Scelfo <scelfo at gmail.com> wrote:
> Does anyone know what might cause the following import error?
> 
> - Adding Dataset "002B48" to Project "CellP"...
> Importing files
>          1/772: [IN PROGRESS] Starting import
>          23/772: [IN PROGRESS] Uploaded files//002B48_A11_w1.TIF
>          48/772: [IN PROGRESS] Uploaded files//002B48_A23_w2.TIF
> ...
> ...
>          755/772: [IN PROGRESS] Uploaded files//002B48_P17_w1.TIF
>          771/772: [IN PROGRESS] Importing
> DBD::Pg::st execute failed: ERROR:  syntax error at or near "$1" at
> character 348
>          771/772: [DIED] Importing
> Successfully Imported:
> 6884: Plate Scan Well A01
> 6885: Plate Scan Well A02
> 6886: Plate Scan Well A03
> 6887: Plate Scan Well A04
> 6888: Plate Scan Well A05
> ...
> ...
> 7267: Plate Scan Well P24
> Exiting...
> Exiting...
> 
> The import process generates a dataset but there are no images in it.
> I'm importing a bunch of tif files and an htd file.
> 
> Thanks,
> Tony
>


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