[ome-devel] Housekeeping..

[Tomasz Macura]

Dear Claude,

I think I might be able to help you with your OME problems.

> As far as import, I have tested again with a jpg, although my tiff 
> were very
> standard single image tiff
You received an email from Jason, I believe, that explains jpegs are 
not supported.

"Standard single image tiffs" are often RGB tiffs. Those are not 
supported by OME 2.2 and probably its forthcoming patch.
To verify this run tiffinfo against the tiff image you are trying to 
import. Please include this info with your reply.

If the "Photometric Interpretation" is RGB then the import is known not 
to work.

To test whether OME is properly installed, and the image importer is 
functioning correctly for tiff images, please download
http://www.openmicroscopy.org/TestImages/n2_plate18_P24_w1.tif and try 
to import it.
This import is expected to succeed.

Hope this helps,

Tom





On Jul 20, 2004, at 6:13 AM, Claude Bonnard wrote:

> Thanks for your reply, Ilya.
>
> The "zealous spam filter" has been submitted to the  IT people , and I 
> want to
> present my appologies for this possible problem which made some of 
> Chris'reply
>  lost who knows where. I now carefully watch in
> http://lists.openmicroscopy.org.uk/pipermail/ome-devel/
>
> and .. let's try all to do our best :-)
>
>
>
>
> I have the same "Successfully imported 0 images" as result, but I 
> found a line
> in the error log... Is this a clue for you?
>
> ....
>
> *DEBUG* PARAM[import_queue]: /DATA_OME/cbonnard/zoom.jpg
> *DEBUG* PARAM[Path]: /DATA_OME/cbonnard
> *DEBUG* PARAM[action]: import
> *DEBUG* PARAM[new_or_existing]: existing
> *DEBUG* PARAM[existing_dataset]: new_dataset
> *DEBUG* PARAM[name]:
> *DEBUG* PARAM[description]: Une image jpg (nom de l'image= zoom, 
> taille 171KB)
> *DEBUG* PARAM[q_selected]: /DATA_OME/cbonnard/zoom.jpg
> [Tue Jul 20 09:47:39 2004] -e: Use of uninitialized value in -d at
> /usr/lib/perl5/site_perl/5.8.0/OME/Web/ImportFiles.pm line 94.
> ....
>
> Thanks for your help!
>
> Claude
>
>
> On Jul 19,  6:26pm, Ilya Goldberg wrote:
>> Subject: Re: [ome-devel] Housekeeping..
>>
>> On Jul 16, 2004, at 6:15 AM, Claude Bonnard wrote:
>>
>>> When images import terminates without the "two active imports" 
>>> message
>>> above,
>>> the success message is: "Successfully imported 0 images". The images
>>> are tif.
>>
>> Ahh.  But what kind of tiff?  The release unfortunately has this
>> 'hanging' bug which is fixed in the release we're currently packing 
>> up.
>> You can release all the hung database handles by restarting apache
>> (sudo apachectl restart).
>> Sorry about this, but we'll have a release candidate up in a few days
>> (not to be used in production environments).
>>
>> Also, it appears that email sent to you from ome-devel is rejected at
>> your end.  Probably an over-zealous spam filter.
>> -Ilya
>> -- End of excerpt from Ilya Goldberg
>
>
>
> -- 
> Claude Bonnard Ph.D.
> ISREC (Swiss Institute for Experimental Cancer Research)
> Microscopy, Imaging and Morphology Core Facility [MIM]
> Lab F216
> Ch des Boveresses 155
> CH-1066 Epalinges
> Switzerland
> phone: [41-21]-692-5891
>   fax: [41-21]-652-6933
> _______________________________________________
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>