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<p class="MsoNormal">Hello All, <o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I am unable to import TIFF / OME.TIF into FIJI. I get the following errors upon going through Bioformats Importer.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I converted my .nd2 file in NIS into TIFF (since the nd2 was so large) for readability.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Can anyone help?<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Many thanks, <o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">CONSOLE:<o:p></o:p></p>
<p class="MsoNormal">Warning: org.apache.xerces.parsers.SAXParser: Feature 'http://javax.xml.XMLConstants/feature/secure-processing' is not recognized.<o:p></o:p></p>
<p class="MsoNormal">Warning: org.apache.xerces.parsers.SAXParser: Property 'http://javax.xml.XMLConstants/property/accessExternalDTD' is not recognized.<o:p></o:p></p>
<p class="MsoNormal">Warning: org.apache.xerces.parsers.SAXParser: Property 'http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit' is not recognized.<o:p></o:p></p>
<p class="MsoNormal"><o:p></o:p></p>
<p class="MsoNormal">EXCEPTION:<o:p></o:p></p>
<p class="MsoNormal">(Fiji Is Just) ImageJ 2.0.0-rc-69/1.52i; Java 1.8.0_66 [64-bit]; Windows 7 6.1; 110MB of 26000MB (<1%)<o:p></o:p></p>
<p class="MsoNormal"><o:p></o:p></p>
<p class="MsoNormal">java.lang.ArithmeticException: / by zero<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.MetadataTools.populatePixelsOnly(MetadataTools.java:293)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.MetadataTools.populateMetadata(MetadataTools.java:251)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.MetadataTools.populatePixels(MetadataTools.java:151)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.in.OMETiffReader.initFile(OMETiffReader.java:1181)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.FormatReader.setId(FormatReader.java:1397)<o:p></o:p></p>
<p class="MsoNormal"> at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:499)<o:p></o:p></p>
<p class="MsoNormal"> at loci.plugins.in.ImportProcess.execute(ImportProcess.java:142)<o:p></o:p></p>
<p class="MsoNormal"> at loci.plugins.in.Importer.showDialogs(Importer.java:140)<o:p></o:p></p>
<p class="MsoNormal"> at loci.plugins.in.Importer.run(Importer.java:76)<o:p></o:p></p>
<p class="MsoNormal"> at loci.plugins.LociImporter.run(LociImporter.java:78)<o:p></o:p></p>
<p class="MsoNormal"> at ij.IJ.runUserPlugIn(IJ.java:228)<o:p></o:p></p>
<p class="MsoNormal"> at ij.IJ.runPlugIn(IJ.java:192)<o:p></o:p></p>
<p class="MsoNormal"> at ij.Executer.runCommand(Executer.java:137)<o:p></o:p></p>
<p class="MsoNormal"> at ij.Executer.run(Executer.java:66)<o:p></o:p></p>
<p class="MsoNormal"> at java.lang.Thread.run(Thread.java:745)<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><b><span style="mso-fareast-language:EN-GB">Dr Darren Thomson</span></b><span style="mso-fareast-language:EN-GB"> |
<span style="color:gray">Experimental Officer <o:p></o:p></span></span></p>
<p class="MsoNormal" style="line-height:150%"><span style="color:gray;mso-fareast-language:EN-GB">Manchester Fungal Infection Group
</span><span style="mso-fareast-language:EN-GB"><a href="http://research.bmh.manchester.ac.uk/mfig"><span style="color:blue">(MFIG)</span></a><span style="color:gray"><o:p></o:p></span></span></p>
<p class="MsoNormal"><span style="color:gray;mso-fareast-language:EN-GB">Tel: (+44) (0)161 306 2457<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:gray;mso-fareast-language:EN-GB">Email: </span>
<span style="mso-fareast-language:EN-GB"><a href="mailto:darren.thomson@manchester.ac.uk"><span style="color:blue">darren.thomson@manchester.ac.uk</span></a><u><span style="color:gray"><o:p></o:p></span></u></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-GB"><img border="0" width="602" height="94" id="Picture_x0020_10" src="cid:image001.png@01D4B1A4.F13BFBA0"><o:p></o:p></span></p>
<p class="MsoNormal"><b><span style="font-size:9.0pt;font-family:"Segoe UI","sans-serif";color:#948A54;mso-fareast-language:EN-GB">Manchester Fungal Infection Group
</span></b><span style="color:gray;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
<p class="MsoNormal"><b><span style="font-size:9.0pt;font-family:"Segoe UI","sans-serif";color:#948A54;mso-fareast-language:EN-GB">NUS Gold Award Winners 2016 for Lab Sustainability<o:p></o:p></span></b></p>
<p class="MsoNormal"><b><span style="mso-fareast-language:EN-GB">Interested in studying Infection Biology?
<a href="http://www.manchester.ac.uk/study/masters/courses/list/12079/mres-infection-biology/">
<span style="color:blue">Click here</span></a><o:p></o:p></span></b></p>
<p class="MsoNormal"><b><span style="mso-fareast-language:EN-GB"><a href="https://www.rms.org.uk/study-read/news-listing-page/rms-digital-calendar-available-to-download.html"><span style="color:blue">Download the 2019 Royal Microscopical Society digital calendar</span></a></span></b><b><span style="font-size:12.0pt;mso-fareast-language:EN-GB"><o:p></o:p></span></b></p>
<p class="MsoNormal"><b><span style="font-size:9.0pt;font-family:"Segoe UI","sans-serif";color:#948A54;mso-fareast-language:EN-GB"><o:p> </o:p></span></b></p>
<p class="MsoNormal"><o:p> </o:p></p>
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