<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
</head>
<body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
Hi Lawrence,
<div class=""><br class="">
</div>
<div class="">It will very much depend on the particular files. From some quick tests Ive found that JPEG seemed to come out slightly ahead for the SVS files I tested while LZW performed better at reducing size on VSI files.</div>
<div class=""><br class="">
</div>
<div class="">If it helps you can find out the original compression and tile sizes using :</div>
<div class="">
<pre style="padding: 5px; background-color: rgb(236, 239, 241); color: rgb(69, 90, 100); line-height: 15.6px; border-top-width: 1px; border-style: solid none; border-top-color: rgb(170, 204, 153); border-bottom-width: 1px; border-bottom-color: rgb(170, 204, 153); orphans: 2; text-align: justify; widows: 2;" class="">showinf <span class="o" style="color: rgb(102, 102, 102);">-nopix</span> <span class="o" style="line-height: 15.6px; color: rgb(102, 102, 102);">/</span><span class="n" style="line-height: 15.6px;">path</span><span class="o" style="line-height: 15.6px; color: rgb(102, 102, 102);">/</span><span class="n" style="line-height: 15.6px;">to</span><span class="o" style="line-height: 15.6px; color: rgb(102, 102, 102);">/</span><span class="nb" style="line-height: 15.6px; color: rgb(0, 112, 32);">inputFile.vsi</span><span style="line-height: 15.6px;" class=""> </span></pre>
</div>
<div class=""><br class="">
</div>
<div class="">You can also set the tile size to be used during conversion using:</div>
<div class="">
<pre style="padding: 5px; background-color: rgb(236, 239, 241); color: rgb(69, 90, 100); line-height: 15.6px; border-top-width: 1px; border-style: solid none; border-top-color: rgb(170, 204, 153); border-bottom-width: 1px; border-bottom-color: rgb(170, 204, 153); orphans: 2; text-align: justify; widows: 2;" class=""><span class="n">bfconvert</span> -compression JPEG <span class="o" style="color: rgb(102, 102, 102);">-</span><span class="n">tilex</span> <span class="mi" style="color: rgb(32, 128, 80);">512</span> <span class="o" style="color: rgb(102, 102, 102);">-</span><span class="n">tiley</span> <span class="mi" style="color: rgb(32, 128, 80);">512</span> <span class="o" style="color: rgb(102, 102, 102);">/</span><span class="n">path</span><span class="o" style="color: rgb(102, 102, 102);">/</span><span class="n">to</span><span class="o" style="color: rgb(102, 102, 102);">/</span><span class="nb" style="color: rgb(0, 112, 32);">inputFile.vsi</span> <span class="n">output</span><span class="o" style="color: rgb(102, 102, 102);">-</span><span class="mi" style="color: rgb(32, 128, 80);">512</span><span class="n">x512</span><span class="o" style="color: rgb(102, 102, 102);">-</span><span class="n">tiles</span><span class="o" style="color: rgb(102, 102, 102);">.</span><span class="n">tiff</span></pre>
<div class=""><br class="">
</div>
</div>
<div class=""><br class="">
</div>
<div class="">With Thanks,</div>
<div class="">David Gault</div>
<div class=""><br class="">
<div>
<blockquote type="cite" class="">
<div class="">On 6 Nov 2018, at 17:21, Tarbox, Lawrence <<a href="mailto:LRTarbox@uams.edu" class="">LRTarbox@uams.edu</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
<div class="WordSection1" style="page: WordSection1; font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
These errors came up while using a compression codec. Here is the command that I was using:<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span style="font-family: 'Courier New';" class="">/home/ltarbox/bftools/bfconvert -no-upgrade -overwrite -compression JPEG \<o:p class=""></o:p></span></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span style="font-family: 'Courier New';" class=""> "${FILES[MOAB_JOBARRAYINDEX-1]}" \<o:p class=""></o:p></span></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span style="font-family: 'Courier New';" class=""> /home/ltarbox/CIR-scans/out/WSI-${MOAB_JOBARRAYINDEX}_S%s.ome.tif<o:p class=""></o:p></span></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Are you thinking that switching from JPEG to JPEG-2000 or LZW would work better?<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
The original .svs images use JPEG compression (I think) with a tile size of 256x256<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
The original .vsi images use JPEG compression with a tile size of 512x512.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
I was somewhat hoping that if I requested -compression JPEG bfconvert would simply copy the already-JPEG-compressed tiles from the original images into the .ome.tif images. But I’m game to try a different compression scheme.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
<div class="">
<div style="border-style: solid none none; border-top-color: rgb(225, 225, 225); border-top-width: 1pt; padding: 3pt 0in 0in;" class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<b class="">From:</b><span class="Apple-converted-space"> </span>David Gault (Staff) <<a href="mailto:d.gault@dundee.ac.uk" class="">d.gault@dundee.ac.uk</a>><span class="Apple-converted-space"> </span><br class="">
<b class="">Sent:</b><span class="Apple-converted-space"> </span>Tuesday, November 6, 2018 9:14 AM<br class="">
<b class="">To:</b><span class="Apple-converted-space"> </span>OME User Support List <<a href="mailto:ome-users@lists.openmicroscopy.org.uk" class="">ome-users@lists.openmicroscopy.org.uk</a>>; Tarbox, Lawrence <<a href="mailto:LRTarbox@uams.edu" class="">LRTarbox@uams.edu</a>><br class="">
<b class="">Subject:</b><span class="Apple-converted-space"> </span>Re: [ome-users] Error when converting large .svs or .vsi images<o:p class=""></o:p></div>
</div>
</div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Hi Lawrence,<span class="Apple-converted-space"> </span><o:p class=""></o:p></div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
It does look like it is related to the file size of the converted file. Setting a compression codec should reduce the required size and might allow for easier conversion. <o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
For example using:<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
bfconvert -compression JPEG-2000 /path/to/originalFile.svs /path/to/convertedFile.ome.tiff<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
bfconvert -compression LZW /path/to/originalFile.svs /path/to/convertedFile.ome.tiff<o:p class=""></o:p></div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
With Thanks,<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
David Gault<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
<div class="">
<blockquote style="margin-top: 5pt; margin-bottom: 5pt;" class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
On 5 Nov 2018, at 20:19, Tarbox, Lawrence <<a href="mailto:LRTarbox@uams.edu" style="color: purple; text-decoration: underline;" class="">LRTarbox@uams.edu</a>> wrote:<o:p class=""></o:p></div>
</div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
I am using 5.9.2, from 3 Sept 2018.<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
The file sizes that are not converting range from 1.7 GB to 4.2 GB. The .svs images that were smaller than about 1.3 GB converted without problem.<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="border-style: solid none none; border-top-color: rgb(225, 225, 225); border-top-width: 1pt; padding: 3pt 0in 0in;" class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<b class="">From:</b><span class="apple-converted-space"> </span>ome-users <<a href="mailto:ome-users-bounces@lists.openmicroscopy.org.uk" style="color: purple; text-decoration: underline;" class="">ome-users-bounces@lists.openmicroscopy.org.uk</a>><span class="apple-converted-space"> </span><b class="">On
Behalf Of<span class="apple-converted-space"> </span></b>David Gault (Staff)<br class="">
<b class="">Sent:</b><span class="apple-converted-space"> </span>Monday, November 5, 2018 7:10 AM<br class="">
<b class="">To:</b><span class="apple-converted-space"> </span>OME User Support List <<a href="mailto:ome-users@lists.openmicroscopy.org.uk" style="color: purple; text-decoration: underline;" class="">ome-users@lists.openmicroscopy.org.uk</a>><br class="">
<b class="">Subject:</b><span class="apple-converted-space"> </span>Re: [ome-users] Error when converting large .svs or .vsi images<o:p class=""></o:p></div>
</div>
</div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Hi Lawrence,<span class="apple-converted-space"> </span><o:p class=""></o:p></div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
That error looks as though the buffer has been unable to successfully increase its limit for some reason.<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
What size are the original files you are trying to convert? Also what version of Bio-Formats are you currently using?<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
With Thanks,<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
David Gault<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<blockquote style="margin-top: 5pt; margin-bottom: 5pt;" class="">
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
On 2 Nov 2018, at 15:21, Tarbox, Lawrence <<a href="mailto:LRTarbox@uams.edu" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">LRTarbox@uams.edu</span></a>> wrote:<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""></o:p></div>
</div>
<div class="">
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
In converting large .svs or .vsi images, I get the following error:<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
/home/ltarbox/CIR-scans<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
54680.svs<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
SVSReader initializing 54680.svs<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Reading IFDs<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Populating metadata<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Populating OME metadata<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[Aperio SVS] -> /home/ltarbox/CIR-scans/out/WSI-2_S%s.ome.tif [OME-TIFF]<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Switching to BigTIFF (by file size)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Tile size = 256 x 256<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Exception in thread "main" java.lang.IllegalArgumentException<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at java.nio.Buffer.limit(Buffer.java:275)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.common.NIOFileHandle.buffer(NIOFileHandle.java:636)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.common.NIOFileHandle.writeSetup(NIOFileHandle.java:642)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.common.NIOFileHandle.write(NIOFileHandle.java:505)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.common.NIOFileHandle.write(NIOFileHandle.java:499)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.common.NIOFileHandle.write(NIOFileHandle.java:487)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.common.RandomAccessOutputStream.write(RandomAccessOutputStream.java:217)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.tiff.TiffSaver.writeIFDStrips(TiffSaver.java:987)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.tiff.TiffSaver.writeImageIFD(TiffSaver.java:451)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.tiff.TiffSaver.writeImage(TiffSaver.java:401)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.tiff.TiffSaver.writeImage(TiffSaver.java:277)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.out.TiffWriter.saveBytes(TiffWriter.java:275)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.out.OMETiffWriter.saveBytes(OMETiffWriter.java:218)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.tools.ImageConverter.convertTilePlane(ImageConverter.java:748)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.tools.ImageConverter.convertPlane(ImageConverter.java:634)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.tools.ImageConverter.testConvert(ImageConverter.java:563)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.tools.ImageConverter.main(ImageConverter.java:884)<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Smaller images convert fine.<span class="apple-converted-space"> </span><o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
I tripled the memory size (to 40 GB), but it stll fails<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Ideas?<o:p class=""></o:p></div>
</div>
</div>
<div style="border-style: none none solid; border-bottom-color: windowtext; border-bottom-width: 1pt; padding: 0in 0in 1pt;" class="">
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span style="color: rgb(68, 114, 196);" class=""> </span><o:p class=""></o:p></div>
</div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span style="color: rgb(68, 114, 196);" class="">Lawrence Tarbox, Ph.D., Dept. of Biomedical Informatics, Univ. of Arkansas for Medical Sciences</span></i><o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<i class=""><span style="color: rgb(68, 114, 196);" class=""><a href="mailto:LTarbox@uams.edu" style="color: purple; text-decoration: underline;" class=""><span style="color: rgb(149, 79, 114);" class="">mailto:LTarbox@uams.edu</span></a><span class="apple-converted-space"> </span>+1.314.681-2752</span></i><o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""></o:p></div>
</div>
</div>
<div class="MsoNormal" align="center" style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; text-align: center;">
<hr size="3" width="100%" align="center" class="">
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span style="font-size: 9pt; font-family: Helvetica, sans-serif;" class="">Confidentiality Notice: This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any
unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies of the original message.<br class="">
_______________________________________________<br class="">
ome-users mailing list<br class="">
</span><a href="mailto:ome-users@lists.openmicroscopy.org.uk" style="color: purple; text-decoration: underline;" class=""><span style="font-size: 9pt; font-family: Helvetica, sans-serif; color: rgb(149, 79, 114);" class="">ome-users@lists.openmicroscopy.org.uk</span></a><span style="font-size: 9pt; font-family: Helvetica, sans-serif;" class=""><br class="">
</span><a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.openmicroscopy.org.uk_mailman_listinfo_ome-2Dusers&d=DwMFAg&c=27AKQ-AFTMvLXtgZ7shZqsfSXu-Fwzpqk4BoASshREk&r=7PfGBb2SHdaGpGKqCizhwg&m=r40EMcblVZoAtg0jtYbiDCk9hOS9PhHfHWfyTgcvMjE&s=AaJ76JDcXs17ypTw9JmpTKnUrJxLimF9uMYHNayZeuw&e=" style="color: purple; text-decoration: underline;" class=""><span style="font-size: 9pt; font-family: Helvetica, sans-serif; color: rgb(149, 79, 114);" class="">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</span></a><o:p class=""></o:p></div>
</div>
</div>
</blockquote>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""></o:p></div>
</div>
</div>
<div class="">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<br class="">
<span style="font-size: 10pt;" class="">The University of Dundee is a registered Scottish Charity, No: SC015096</span><o:p class=""></o:p></div>
</div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span style="font-size: 9pt; font-family: Helvetica, sans-serif;" class="">_______________________________________________<br class="">
ome-users mailing list<br class="">
</span><a href="mailto:ome-users@lists.openmicroscopy.org.uk" style="color: purple; text-decoration: underline;" class=""><span style="font-size: 9pt; font-family: Helvetica, sans-serif; color: purple;" class="">ome-users@lists.openmicroscopy.org.uk</span></a><span style="font-size: 9pt; font-family: Helvetica, sans-serif;" class=""><br class="">
</span><a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.openmicroscopy.org.uk_mailman_listinfo_ome-2Dusers&d=DwMFAg&c=27AKQ-AFTMvLXtgZ7shZqsfSXu-Fwzpqk4BoASshREk&r=FQmnf-oLIEICrzyIHywOlUOTxJWIZf3tvJ8LUzIG0qM&m=3m3AIgFE_QbUasB7kt9_RCytADWjS30QJ6Al7TrUAQA&s=kfZIGmhU35jS7P0cZDCo9Svf9RFFIpFrGtbxDCbc37Y&e=" style="color: purple; text-decoration: underline;" class=""><span style="font-size: 9pt; font-family: Helvetica, sans-serif; color: purple;" class="">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</span></a><o:p class=""></o:p></div>
</div>
</blockquote>
</div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
</div>
</div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<br class="">
<span style="font-size: 10pt;" class="">The University of Dundee is a registered Scottish Charity, No: SC015096</span></div>
</div>
</div>
</blockquote>
</div>
<br class="">
</div>
<br>
<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
</body>
</html>