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Hi Kai,
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<div class="">Thank you for helping to investigate this further. When using the macro you attached I see the LUT being used correctly for both of the imports. For TIFF and OME-TIFF this works for me with the latest Bio-Formats so long as the color mode selected
is ‘Default’ (which is correct with the macro). However the ICS and CH5 conversion I am seeing the grayscale upon import so there does appear to be an issue here that requires further investigating. I will update the Trello card and continue to debug the export
process.</div>
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<div class="">With Thanks,</div>
<div class="">David Gault</div>
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<div class="">On 5 Nov 2018, at 16:48, Kai Schleicher <<a href="mailto:kai.schleicher@unibas.ch" class="">kai.schleicher@unibas.ch</a>> wrote:</div>
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run("M51 Galaxy (177K, 16-bits)");<br class="">
run("cool", "display=m51.tif view=net.imagej.display.DefaultDatasetView@7a6b36cd");<br class="">
run("Bio-Formats Exporter", "save=/home/kai/Desktop/m51_cool.tif");<br class="">
// does not work with bio-formats importer<br class="">
run("Bio-Formats Importer", "open=/home/kai/Desktop/m51_cool.tif autoscale color_mode=Default rois_import=[ROI manager] view=Hyperstack stack_order=XYCZT");<br class="">
// but works with Imagej open<br class="">
open("/home/kai/Desktop/m51_cool.tif");$</blockquote>
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