<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=Windows-1252">
</head>
<body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0);">
<div style="font-family: Calibri, sans-serif; font-size: 14px;">
<p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt;" id="docs-internal-guid-66202d4c-7fff-4ee7-571c-9aee6f97ec9a">
<span style="font-size: 11pt; font-family: Arial; font-variant-ligatures: normal; font-variant-east-asian: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;">Dear Eric</span></p>
<br>
<p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt;"><span style="font-size: 11pt; font-family: Arial; font-variant-ligatures: normal; font-variant-east-asian: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;">Thanks
for you post</span></p>
<br>
<p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt;"><span style="font-size: 11pt; font-family: Arial; font-variant-ligatures: normal; font-variant-east-asian: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;">Users
can already open their images in any 3rd party tool e.g. NIS Elements Viewer, using the "Open With" option available in OMERO.insight,</span></p>
<p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt;"><span style="font-size: 11pt; font-family: Arial; font-variant-ligatures: normal; font-variant-east-asian: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;">By
default the exchange format between OMERO and the external application is OME-TIFF.</span></p>
<p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt;"><span style="font-size: 11pt; font-family: Arial; font-variant-ligatures: normal; font-variant-east-asian: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;">To
use the original format e.g. nd2, you will need to replace, in container.xml, false by true for the following entry:</span></p>
<p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt;"><span style="font-size: 11pt; font-family: Arial; font-variant-ligatures: normal; font-variant-east-asian: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;"><entry
name="/services/OpenWith/Original" type="boolean">false</entry></span></p>
<p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt;"><span style="font-size: 11pt; font-family: Arial; font-variant-ligatures: normal; font-variant-east-asian: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;">This
flag is global so it will apply to all the 3rd party applications used that way. Also it will only work for the file formats Elements currently supports.</span></p>
<p dir="ltr" style="line-height:1.38;margin-top:0pt;margin-bottom:0pt;"><span style="font-size: 11pt; font-family: Arial; font-variant-ligatures: normal; font-variant-east-asian: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;"><br>
</span></p>
<span style="font-family: Arial; font-size: 14.666666984558105px; white-space: pre-wrap;">This might be sufficient for what you have in mind.</span></div>
<div><font face="Arial" size="3"><span style="white-space: pre-wrap;"><br>
</span></font>
<p dir="ltr" style="font-family: Calibri, sans-serif; font-size: 14px; line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;">
<span style="font-size: 11pt; font-family: Arial; font-variant-ligatures: normal; font-variant-east-asian: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;">Note that OMERO.web has an Open With option but it does not allow
to communicate with Desktop applications. The functionality is only able to open images/datasets in other OMERO.web apps.
</span></p>
<br>
<p dir="ltr" style="font-family: Calibri, sans-serif; font-size: 14px; line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;">
<br>
</p>
<p dir="ltr" style="font-family: Calibri, sans-serif; font-size: 14px; line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;">
<span style="font-size: 11pt; font-family: Arial; font-variant-ligatures: normal; font-variant-east-asian: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;">For further integration, Elements will need to be able to interact
with the OMERO API.</span></p>
<p dir="ltr" style="font-family: Calibri, sans-serif; font-size: 14px; line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;">
<span style="font-size: 11pt; font-family: Arial; font-variant-ligatures: normal; font-variant-east-asian: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;">We will certainly be interested to move that discussion forward.</span></p>
<br>
<p dir="ltr" style="font-family: Calibri, sans-serif; font-size: 14px; line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;">
<span style="font-size: 11pt; font-family: Arial; font-variant-ligatures: normal; font-variant-east-asian: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;">Cheers</span></p>
<p dir="ltr" style="font-family: Calibri, sans-serif; font-size: 14px; line-height: 1.38; margin-top: 0pt; margin-bottom: 0pt;">
<span style="font-size: 11pt; font-family: Arial; font-variant-ligatures: normal; font-variant-east-asian: normal; font-variant-position: normal; vertical-align: baseline; white-space: pre-wrap;">Jean-Marie</span></p>
</div>
<div style="font-family: Calibri, sans-serif; font-size: 14px;"><br>
</div>
<span id="OLK_SRC_BODY_SECTION" style="font-family: Calibri, sans-serif; font-size: 14px;">
<div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt">
<span style="font-weight:bold">From: </span>ome-users <<a href="mailto:ome-users-bounces@lists.openmicroscopy.org.uk">ome-users-bounces@lists.openmicroscopy.org.uk</a>> on behalf of "Munro, Ian" <<a href="mailto:i.munro@imperial.ac.uk">i.munro@imperial.ac.uk</a>><br>
<span style="font-weight:bold">Reply-To: </span>OME User Support List <<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Date: </span>Monday, 24 September 2018 at 11:36<br>
<span style="font-weight:bold">To: </span>OME User Support List <<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Subject: </span>Re: [ome-users] Elements Opener<br>
</div>
<div><br>
</div>
<div><style type="text/css" style="display:none;"><!-- P {margin-top:0;margin-bottom:0;} --></style>
<div dir="ltr">
<div id="divtagdefaultwrapper" style="font-size:12pt;color:#000000;font-family:Calibri,Helvetica,sans-serif;" dir="ltr">
<p style="margin-top:0;margin-bottom:0">Hi Eric</p>
<p style="margin-top:0;margin-bottom:0"><br>
</p>
<p style="margin-top:0;margin-bottom:0">If Eclipse can interface to Java then this may be of use:
<a href="https://github.com/flimfit/omeUiUtils" class="OWAAutoLink" id="LPlnk792055" previewremoved="true">
https://github.com/flimfit/omeUiUtils</a></p>
<p style="margin-top:0;margin-bottom:0"><br>
</p>
<p style="margin-top:0;margin-bottom:0"><span>It was written to provide a lightweight interface to allow the user to Graphically select Images or Datasets from OMERO. Unfortunately it would need some slight updating to work with the current version of OMERO
, as I havent been keeping it up-to-date but I suspect the OME team could assist with that. Of course, they may also have a better solution available now.</span></p>
<p style="margin-top:0;margin-bottom:0"><span><br>
</span></p>
<p style="margin-top:0;margin-bottom:0"><span>Best Wishes</span></p>
<p style="margin-top:0;margin-bottom:0"><span><br>
</span></p>
<p style="margin-top:0;margin-bottom:0"><span>Ian</span><br>
</p>
<p style="margin-top:0;margin-bottom:0"></p>
<div id="LPBorder_GT_15377849882940.35188744496120816" style="margin-bottom: 20px; overflow: auto; width: 100%; text-indent: 0px;">
<table id="LPContainer_15377849882470.5423639210471533" style="width: 90%; background-color: rgb(255, 255, 255); position: relative; overflow: auto; padding-top: 20px; padding-bottom: 20px; margin-top: 20px; border-top: 1px dotted rgb(200, 200, 200); border-bottom: 1px dotted rgb(200, 200, 200);" role="presentation" cellspacing="0">
<tbody>
<tr style="border-spacing: 0px;" valign="top">
<td id="ImageCell_15377849882830.4564196471873603" style="width: 250px; position: relative; display: table-cell; padding-right: 20px;" colspan="1">
<div id="LPImageContainer_15377849882830.6049465704460895" style="background-color: rgb(255, 255, 255); height: 250px; position: relative; margin: auto; display: table; width: 250px;">
<a id="LPImageAnchor_15377849882850.6542879095803696" style="display: table-cell; text-align: center;" href="https://github.com/flimfit/omeUiUtils" target="_blank"><img style="display: inline-block; max-width: 250px; max-height: 250px; height: 250px; width: 250px; border-width: 0px; vertical-align: bottom;" id="LPThumbnailImageID_15377849882850.6542019327650255" width="250" height="250" src="https://avatars1.githubusercontent.com/u/20959969?s=400&v=4"></a></div>
</td>
<td id="TextCell_15377849882860.7571420180457132" style="vertical-align: top; position: relative; padding: 0px; display: table-cell;" colspan="2">
<div id="LPRemovePreviewContainer_15377849882860.5461925676422694"></div>
<div id="LPTitle_15377849882860.9265957999908978" style="top: 0px; color: rgb(2, 44, 90); font-weight: 400; font-size: 21px; font-family: "wf_segoe-ui_light", "Segoe UI Light", "Segoe WP Light", "Segoe UI", "Segoe WP", Tahoma, Arial, sans-serif; line-height: 21px;">
<a id="LPUrlAnchor_15377849882910.01553096804656251" style="text-decoration: none;" href="https://github.com/flimfit/omeUiUtils" target="_blank">flimfit/omeUiUtils</a></div>
<div id="LPMetadata_15377849882920.16199181199933288" style="margin: 10px 0px 16px; color: rgb(102, 102, 102); font-weight: 400; font-family: "wf_segoe-ui_normal", "Segoe UI", "Segoe WP", Tahoma, Arial, sans-serif; font-size: 14px; line-height: 14px;">
github.com</div>
<div id="LPDescription_15377849882940.6963116738289773" style="display: block; color: rgb(102, 102, 102); font-weight: 400; font-family: "wf_segoe-ui_normal", "Segoe UI", "Segoe WP", Tahoma, Arial, sans-serif; font-size: 14px; line-height: 20px; max-height: 100px; overflow: hidden;">
Utilities for adding OMERO functionality to desktop clients. - flimfit/omeUiUtils</div>
</td>
</tr>
</tbody>
</table>
</div>
<br>
<p></p>
</div>
<hr style="display:inline-block;width:98%" tabindex="-1">
<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri,sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> ome-users <<a href="mailto:ome-users-bounces@lists.openmicroscopy.org.uk">ome-users-bounces@lists.openmicroscopy.org.uk</a>> on behalf of Griffis,
Eric <<a href="mailto:egriffis@ucsd.edu">egriffis@ucsd.edu</a>><br>
<b>Sent:</b> 23 September 2018 23:25:02<br>
<b>To:</b> OME User Support List; <a href="mailto:richard.gruskin@nikon.com">richard.gruskin@nikon.com</a><br>
<b>Subject:</b> [ome-users] Elements Opener</font>
<div> </div>
</div>
<meta content="text/html; charset=utf-8">
<meta name="x_Generator" content="Microsoft Word 15 (filtered medium)">
<style>
<!--
@font-face
{font-family:Helvetica}
@font-face
{font-family:"Cambria Math"}
@font-face
{font-family:Calibri}
@font-face
{}
p.x_MsoNormal, li.x_MsoNormal, div.x_MsoNormal
{margin:0cm;
margin-bottom:.0001pt;
font-size:12.0pt;
font-family:"Calibri",sans-serif}
a:x_link, span.x_MsoHyperlink
{color:#0563C1;
text-decoration:underline}
a:x_visited, span.x_MsoHyperlinkFollowed
{color:#954F72;
text-decoration:underline}
span.x_EmailStyle17
{font-family:Helvetica;
color:windowtext}
.x_MsoChpDefault
{font-family:"Calibri",sans-serif}
@page WordSection1
{margin:72.0pt 72.0pt 72.0pt 72.0pt}
div.x_WordSection1
{}
-->
</style>
<div lang="EN-GB" link="#0563C1" vlink="#954F72">
<div class="x_WordSection1">
<p class="x_MsoNormal"><span style="font-family:Helvetica">Hi All, </span></p>
<p class="x_MsoNormal"><span style="font-family:Helvetica"> </span></p>
<p class="x_MsoNormal"><span style="font-family:Helvetica">We’re having an OMERO server built here at UCSD for the users of our new Nikon Imaging Center. I really loved the OMERO opener within ImageJ. Would it be possible to implement something similar within
Elements, to allow users to open their OMERO DBs and images in Elements and then do and save their analyses in Elements?
</span></p>
<p class="x_MsoNormal"><span style="font-family:Helvetica"> </span></p>
<p class="x_MsoNormal"><span style="font-family:Helvetica">Thanks,</span></p>
<p class="x_MsoNormal"><span style="font-family:Helvetica"> </span></p>
<p class="x_MsoNormal"><span style="font-family:Helvetica">Eric</span></p>
<p class="x_MsoNormal"><span style="font-family:Helvetica"> </span></p>
<p class="x_MsoNormal"><span style="font-family:Helvetica"> </span></p>
<p class="x_MsoNormal"><span lang="EN-US" style="font-family:Helvetica">Eric Griffis, Ph.D.
</span></p>
<p class="x_MsoNormal"><span lang="EN-US" style="font-family:Helvetica"> </span></p>
<p class="x_MsoNormal"><span lang="EN-US" style="font-family:Helvetica">Director</span></p>
<p class="x_MsoNormal"><span lang="EN-US" style="font-family:Helvetica">Nikon Imaging Center</span></p>
<p class="x_MsoNormal"><span lang="EN-US" style="font-family:Helvetica">Leichtag 483</span></p>
<p class="x_MsoNormal"><span lang="EN-US" style="font-family:Helvetica">9500 Gilman Drive; Mail code 0694</span></p>
<p class="x_MsoNormal"><span lang="EN-US" style="font-family:Helvetica">University of California, San Diego</span></p>
<p class="x_MsoNormal"><span lang="EN-US" style="font-family:Helvetica">La Jolla, CA 92093-0694</span></p>
<p class="x_MsoNormal"><span lang="EN-US" style="font-family:Helvetica"> </span></p>
<p class="x_MsoNormal"><span lang="EN-US" style="font-family:Helvetica">Email: <a href="mailto:egriffis@ucsd.edu">
<span style="color:#0563C1">egriffis@ucsd.edu</span></a></span></p>
<p class="x_MsoNormal"><span lang="EN-US" style="font-family:Helvetica">Phone: 858-246-3162</span></p>
<p class="x_MsoNormal"><span lang="EN-US" style="font-family:Helvetica"> </span></p>
<p class="x_MsoNormal"> </p>
</div>
</div>
</div>
</div>
</span><br>
<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
</body>
</html>