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<p style="margin-top:0;margin-bottom:0">Dear Kai</p>
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<p style="margin-top:0;margin-bottom:0">Some time ago I wrote some example code to write plate data (from arrays in memory ) into an ome-tiff
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<p style="margin-top:0;margin-bottom:0">Maybe you could adapt that either by reading your individual tiffs into memory or possibly by using it to write an accompanying xml file to go with your tiffs.</p>
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<p style="margin-top:0;margin-bottom:0"><a href="https://github.com/openmicroscopy/bioformats/blob/develop/components/formats-gpl/utils/FileWriteSPW.java" class="OWAAutoLink" id="LPlnk891183" previewremoved="true">https://github.com/openmicroscopy/bioformats/blob/develop/components/formats-gpl/utils/FileWriteSPW.java</a></p>
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<a id="LPUrlAnchor_15326875202920.25604044621415323" style="text-decoration: none;" href="https://github.com/openmicroscopy/bioformats/blob/develop/components/formats-gpl/utils/FileWriteSPW.java" target="_blank">openmicroscopy/bioformats</a></div>
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github.com</div>
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bioformats - Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the ...</div>
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<p style="margin-top:0;margin-bottom:0">I'm not sure the second option is viable - hopefully somebody has a better idea.</p>
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<p style="margin-top:0;margin-bottom:0">I hope that's of some help.</p>
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<p style="margin-top:0;margin-bottom:0">Best Wishes</p>
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<p style="margin-top:0;margin-bottom:0">Ian<br>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> ome-users <ome-users-bounces@lists.openmicroscopy.org.uk> on behalf of Kai Schleicher <kai.schleicher@unibas.ch><br>
<b>Sent:</b> 25 July 2018 16:22:31<br>
<b>To:</b> ome-users@lists.openmicroscopy.org.uk<br>
<b>Subject:</b> [ome-users] Import plate data from the FEI MORE as screen in OMERO</font>
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<p>Dear OME team,</p>
<p>I acquired a <a href="https://filesender.switch.ch/filesender/?vid=7ada3ba0-e2e2-9629-ca18-00001996de3c">
few images in a 96 plate</a> (2 Wells, 4 images/well, 3 channels/ image) on an automated Widefield system (FEI MORE, using the Live Acquisition (LA) software v 2.6).</p>
<p>The data is saved as single tiffs with metadata. Additionally it saves one xml file per well that contains information about the sites imaged.</p>
<p>I would like to import this data in OMERO in the screen/plate format.<br>
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<p>Both the image metadata and the xml file is supposedly compatible with the ome data model, but I did not yet find a configuration in which these images can be imported into OMERO as a plate/screen.</p>
<p>My question is hence if you could have a look and see if I am somewhat close to achieve my goal :)</p>
<p>Since its probably not so easy, could you let me know what else would be needed for OMERO to import these images as a screen?</p>
<p>Thanks and cheers,<br>
Kai<br>
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<pre class="x_moz-signature" cols="72">--
>>Please note my NEW PHONE NUMBERS: +41 61 207 57 31 (direct) +41 61 207 22 50 (central)<<
Kai Schleicher, PhD | Research Associate in Advanced Light Microscopy | Biozentrum, University of Basel | Klingelbergstrasse 50/70 | CH-4056 Basel |
Phone: +41 61 207 57 31 (direct) +41 61 207 22 50 (central) | <a class="x_moz-txt-link-abbreviated" href="mailto:kai.schleicher@unibas.ch">kai.schleicher@unibas.ch</a> | <a class="x_moz-txt-link-abbreviated" href="http://www.biozentrum.unibas.ch">www.biozentrum.unibas.ch</a> | <a class="x_moz-txt-link-abbreviated" href="http://www.microscopynetwork.unibas.ch">www.microscopynetwork.unibas.ch</a></pre>
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