<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div class="">Hi,</div><div class=""><br class=""></div><div class="">Looking at <a href="https://github.com/ome/bio-formats-matlab/blob/51295373fc6a121c9ea94be686e86772cac4f23e/src/bfopen.m" class="">https://github.com/ome/bio-formats-matlab/blob/51295373fc6a121c9ea94be686e86772cac4f23e/src/bfopen.m</a>, the following appears to fix the problem (bfopen worked with this change).</div><div class=""><br class=""></div><div class=""> metadataList = r.getSeriesMetadata();</div><div class=""><br class=""></div><div class="">Best,</div><div class="">Kouichi</div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><blockquote type="cite" class=""><pre class="">To whom it may concern,
|<i class="">bfopen.m| does not work and issues an error as below:
</i>
|<i class=""> >> data = bfopen('Z:\xxxxx\xxxxx\Image000.png') Warning: Invalid file
</i>or directory 'D:\Fiji.app\scripts\..\plugins\loci_tools.jar'. > In
javaclasspath>local_validate_dynamic_path (line 271) In
javaclasspath>local_javapath (line 187) In javaclasspath (line 124) In
javaaddpath (line 71) In bfopen (line 103) APNGReader initializing
Z:\Analysis\Images from Otto\Image000.png Reading series #1 ...Undefined
function or variable 'getMetadata'. Error in bfopen (line 268)
metadataList = r.getMetadata(); 268 metadataList = r.getMetadata(); |
Output of |methods(loci.formats.ChannelSeparator)| or |methods(r)| does
not contain |getMetadata| method. I suspect that the method has been
recently renamed.
environments:
MATLAB Version: 9.4.0.813654 (R2018a)
Java 1.8.0_144-b01 with Oracle Corporation Java HotSpot(TM) 64-Bit
Server VM mixed mode
Bio-formats MATLAB toolbox 5.8.1 (2018 March 22)
Best regards,
Kouichi
--
Kouichi C. Nakamura, PhD
Senior Postdoctoral Neuroscientist
MRC Brain Network Dynamics Unit
University of Oxford
Mansfield Road, Oxford OX1 3TH, United Kingdom
+44-1865-271582 (office)
<a href="http://www.mrcbndu.ox.ac.uk/people/dr-kouichi-c-nakamura" class="">http://www.mrcbndu.ox.ac.uk/people/dr-kouichi-c-nakamura</a>
<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users" class="">kouichi.c.nakamura at gmail.com</a>
<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users" class="">kouichi.nakamura at pharm.ox.ac.uk</a></pre></blockquote><div class=""><br class=""></div></div></body></html>