<html>
<head>
<meta http-equiv="Content-Type" content="text/html;
charset=windows-1252">
</head>
<body text="#000000" bgcolor="#FFFFFF">
<p>Hi Kenny,</p>
<p>thank you very much for have a look at the logs!</p>
<p>We took now some more <a moz-do-not-send="true"
href="https://filesender.switch.ch/filesender/?vid=3de95035-be53-1e09-e2ae-00007137f95f">log
files from before the crash</a> - they are a bit heavier, but I
hope you can find something there.</p>
<p>Thanks again for your help and cheers from Basel,<br>
Kai<br>
</p>
<br>
<div class="moz-cite-prefix">On 03/07/2018 05:49 PM, Kenneth Gillen
(Staff) wrote:<br>
</div>
<blockquote type="cite"
cite="mid:D6C5C835.3C426%25k.h.gillen@dundee.ac.uk">
<meta http-equiv="Content-Type" content="text/html;
charset=windows-1252">
<div>
<div>Hi Kai,</div>
<div><br>
</div>
<div>It might be useful to see more Blitz log files - from
before a crash, too – the log there is only from a
server-start onwards. What happens before the server startup
could be useful.</div>
<div>
<div><br>
</div>
<div>
<div>All the best,</div>
<div><br>
</div>
<div>Kenny</div>
<div><br>
</div>
<div>--</div>
<div><br>
</div>
<div>
<div style="font-family: Calibri; font-size: medium;"><span
style="font-size: 12px; font-style: italic;
font-weight: bold; font-family: Arial;">Kenneth Gillen</span></div>
</div>
<div>
<div style="font-size: medium;"><span style="font-size:
12px;"><font style="font-family: Tahoma;">
<div><span style="font-family: Arial;">OME System
Administrator</span></div>
<span style="font-family: Calibri;"><br
style="font-family: Arial;">
</span></font><span style="font-family: Tahoma;"
lang="en-GB">
<div style="margin: 0pt; font-family: Arial;"><font
color="black">Wellcome Trust Centre for Gene
Regulation & Expression</font></div>
<div style="margin: 0pt; font-family: Arial;"><font
color="black">School of Life Sciences</font></div>
<div style="margin: 0pt; font-family: Arial;"><font
color="black">CTIR 2</font></div>
<div style="margin: 0pt; font-family: Arial;"><font
color="black">University of Dundee</font></div>
<div style="margin: 0pt; font-family: Arial;"><font
color="black">Dow Street</font></div>
<div style="margin: 0pt;"><font style="font-family:
Arial;"><font color="black">Dundee DD1 5EH<br>
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</div>
<span id="OLK_SRC_BODY_SECTION">
<div style="font-family:Calibri; font-size:11pt;
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<span style="font-weight:bold">From: </span>ome-users <<a
href="mailto:ome-users-bounces@lists.openmicroscopy.org.uk"
moz-do-not-send="true">ome-users-bounces@lists.openmicroscopy.org.uk</a>>
on behalf of Kai Schleicher <<a
href="mailto:kai.schleicher@unibas.ch"
moz-do-not-send="true">kai.schleicher@unibas.ch</a>><br>
<span style="font-weight:bold">Reply-To: </span>OME User
Support List <<a
href="mailto:ome-users@lists.openmicroscopy.org.uk"
moz-do-not-send="true">ome-users@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Date: </span>Wednesday, 7
March 2018 16:37<br>
<span style="font-weight:bold">To: </span>"Sebastien Besson
(Staff)" <<a href="mailto:s.besson@dundee.ac.uk"
moz-do-not-send="true">s.besson@dundee.ac.uk</a>><br>
<span style="font-weight:bold">Cc: </span>users OME <<a
href="mailto:ome-users@lists.openmicroscopy.org.uk"
moz-do-not-send="true">ome-users@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Subject: </span>Re:
[ome-users] install Slidebook file format extension for OMERO<br>
</div>
<div><br>
</div>
<div>
<div text="#000000" bgcolor="#FFFFFF">
<p>Hi Sebastien,</p>
<p>we have tested the upload of slidebook files now a little
bit more extensively and realised that when uploading
several files (with OMERO.insight) the server crashes and
reboots.</p>
<p>We are not sure what happened there, but I have uploaded
<a moz-do-not-send="true"
href="https://filesender.switch.ch/filesender/?vid=731f7cfc-c738-85e9-120b-000071d43069">the
relevant log files for you to download</a>.</p>
<p>From going through the logs its unfortunately not clear
to me what happened. If you have a free moment, could you
have a look and maybe point us in the right direction?</p>
<p>Thank you and cheers,<br>
Kai<br>
</p>
<br>
<div class="moz-cite-prefix">On 02/13/2018 04:06 PM,
Sebastien Besson (Staff) wrote:<br>
</div>
<blockquote type="cite"
cite="mid:1E2C6054-E57A-4026-B0BE-500CCEB16A59@dundee.ac.uk">
Hi Kai,
<div class=""><br class="">
<div>
<blockquote type="cite" class="">
<div class="">On 13 Feb 2018, at 13:41, Kai
Schleicher <<a
href="mailto:kai.schleicher@unibas.ch" class=""
moz-do-not-send="true">kai.schleicher@unibas.ch</a>>
wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
<div text="#000000" bgcolor="#FFFFFF" class="">
<p class="">Hi Sebastien,</p>
<p class="">This is brilliant! thanks so much!</p>
<p class="">It does now work on windows (which
is the most prominent usecase anyway). We
added the jar file also to our server and
indeed the upload as well as reading
metadadata and generating thumbnails succeeded
:)</p>
</div>
</div>
</blockquote>
Great. Very glad to hear it. And really interesting
example of workflow integrating</div>
<div>third-party libraries developed by the
constructors.</div>
<div>
<blockquote type="cite" class="">
<div class="">
<div text="#000000" bgcolor="#FFFFFF" class="">
<p class="">Except <a moz-do-not-send="true"
href="x-msg://42/,,https://filesender.switch.ch/filesender/?vid=469ebaef-1b1d-5349-f357-00001c21ea73"
class="">
for one file</a>, which opend fine in Fiji
or the native slidebook reader. I am not so
sure what the difference is to
<a moz-do-not-send="true"
href="https://filesender.switch.ch/filesender/?vid=2be15da3-c0a1-8e28-0b76-000023dfc166"
class="">
the ones that work</a> (see screenshot).</p>
</div>
</div>
</blockquote>
To know more we would probably need to see what failed
in the server-side import log.</div>
<div>If the failure happens when SlideBook6Reader tries
to read the data, this is something</div>
<div>worth reporting to them.<br class="">
<blockquote type="cite" class="">
<div class="">
<div text="#000000" bgcolor="#FFFFFF" class="">
<p class="">While it works on windows, it still
fails on my linux (on which I tried it in the
beginning). Is there maybe a cache somewhere
that needs to be delete first?</p>
</div>
</div>
</blockquote>
I do not think there should be any caching involved.
Using the linux client<span class="">, </span>after
downloading</div>
<div>and moving SlideBook6Reader.jar under the libs/
folder, I have</div>
<div><br class="">
</div>
<span class="">[sbesson@ome-c6100-1
OMERO.importer-5.3.5-ice36-b73-linux]$ ./importer-cli
--debug ERROR
-f /ome/data_repo/curated/slidebook/alexia/utrophinGFP_sih_e1_time1.sld <br
class="">
Starting OMERO.importer...<br class="">
…<br class="">
#======================================<br class="">
# Group:
/ome/data_repo/curated/slidebook/alexia/utrophinGFP_sih_e1_time1.sld
SPW: false Reader: loci.formats.in.SlideBook6Reader<br
class="">
/ome/data_repo/curated/slidebook/alexia/utrophinGFP_sih_e1_time1.sld</span></div>
<div class=""><span class=""><br class="">
</span></div>
<div class=""><span class="">Is your import failing
client-side or server-side? Also is your Linux
architecture 32bit or 64bit?</span></div>
<div class=""><span class=""><br class="">
</span></div>
<div class=""><span class="">Best,</span></div>
<div class=""><span class="">Sebastien</span></div>
<div class=""><span class=""><br class="">
<blockquote type="cite" class="">Thanks so much for
you help and cheers,<br class="">
Kai<br class="">
<br class="">
On 02/13/2018 01:37 PM, Sebastien Besson (Staff)
wrote:<br class="">
<blockquote type="cite"
cite="mid:7984081D-5915-43D1-901E-5D9B890E4E3B@dundee.ac.uk"
class="">
Hi Kai,<br class="">
<br class="">
Follow-up of my answer from yesterday, I
performed additional testing using OMERO.insight
5.3.5<br class="">
against an OMERO 5.3. server (as an aside,
very easily created using docker-compose [1]).<br
class="">
<br class="">
Using the vanilla Insight 5.3.5 client, the
import of an unsupported Slidebook file, gives a
File Not Valid<br class="">
exception:<br class="">
<span id="cid:part3.380583D4.0092C7D8@unibas.ch"><Screen
Shot 2018-02-13 at 11.50.08.png></span><br
class="">
After putting SlideBook6Reader.jar under the
Java folder, the same file uploads correctly to
the server<br class="">
and fails at the metadata processing
step server-side since the JAR has not been added
there.<br class="">
<span id="cid:part4.8EB8D5E2.E8DF29B7@unibas.ch"><Screen
Shot 2018-02-13 at 11.51.54.png></span><br
class="">
In summary, this workflow should work on OMERO
5.3.x as well as OMERO 5.4.x. As an indication<br
class="">
that the 3i JAR is properly recognized by
Insight, the Format Type dropdown menu in the
Importer<br class="">
window should include an entry called “SlideBook
6 SLD (native)”.<br class="">
<br class="">
Best,<br class="">
Sebastien<br class="">
<br class="">
<br class="">
[1] <a
href="https://github.com/openmicroscopy/omero-test-infra/blob/v0.2.1/docker-compose.yml"
class="" moz-do-not-send="true">https://github.com/openmicroscopy/omero-test-infra/blob/v0.2.1/docker-compose.yml</a> <br
class="">
<br class="">
<blockquote type="cite" class="">On 12 Feb 2018,
at 17:25, Sebastien Besson (Staff)
<a class="moz-txt-link-rfc2396E"
href="mailto:s.besson@dundee.ac.uk"
moz-do-not-send="true"><s.besson@dundee.ac.uk></a> wrote:<br
class="">
<br class="">
Hi Kai,<br class="">
<br class="">
great. From your original exception
the following line<br class="">
<br class="">
<blockquote type="cite" class="">
<blockquote type="cite"
cite="mid:93174DCA-D8F0-40C0-9A95-FE66679AC076@dundee.ac.uk"
class="">
<blockquote type="cite" class="">
<blockquote type="cite" class="">java.lang.IndexOutOfBoundsException: Index:
0, Size: 0 <br class="">
at java.util.ArrayList.rangeCheck(ArrayList.java:653) <br
class="">
at java.util.ArrayList.get(ArrayList.java:429) <br
class="">
at loci.formats.in.SlidebookReader.initFile(SlidebookReader.java:654) <br
class="">
</blockquote>
</blockquote>
</blockquote>
</blockquote>
<br class="">
indicates that the old Slidebook reader is still
used to detect the import candidate rather than<br
class="">
the 3i SlideBook6Reader.<br class="">
<br class="">
I have tested this workflow:
download OMERO.insight, rename the 3i slidebook
jar, add it to<br class="">
the Java folder, start OMERO.Insight, try to
import a new Slidebook file and it worked on<br
class="">
OMERO 5.4 (at least it was uploaded to
the server which did not know how to read it
because<br class="">
I hadn’t added the JAR there).<br class="">
<br class="">
I have not tested on OMERO 5.3 but will
do tomorrow although i would expect it to work
under this<br class="">
series. Also which operating system are you
using for the import?<br class="">
<br class="">
Best,<br class="">
Sebastien<br class="">
<br class="">
<blockquote type="cite" class="">On 9 Feb 2018,
at 16:21, Kai Schleicher <a
class="moz-txt-link-rfc2396E"
href="mailto:kai.schleicher@unibas.ch"
moz-do-not-send="true">
<kai.schleicher@unibas.ch></a> wrote:<br
class="">
<br class="">
Hi Sebastian,<br class="">
<br class="">
<br class="">
<blockquote type="cite" class="">Did you
rename the file as xxx.jar before putting
them under your Java<br class="">
folder?<br class="">
</blockquote>
yes I did, I renamed it
to "SlideBook6Reader.jar". Sorry, I should
have written that in my previous mail.<br
class="">
<br class="">
cheers,<br class="">
Kai<br class="">
<br class="">
On 02/09/2018 04:21 PM, Sebastien Besson
(Staff) wrote:<br class="">
<blockquote type="cite"
cite="mid:93174DCA-D8F0-40C0-9A95-FE66679AC076@dundee.ac.uk"
class="">
Hi Kai,<br class="">
<br class="">
<br class="">
<blockquote type="cite" class="">On 9 Feb
2018, at 13:43, Kai Schleicher <a
class="moz-txt-link-rfc2396E"
href="mailto:kai.schleicher@unibas.ch"
moz-do-not-send="true">
<kai.schleicher@unibas.ch></a> wrote:<br
class="">
<br class="">
Hi Sebastien,<br class="">
<br class="">
thanks for the update!<br class="">
We have added the JAR [1] to the insight
client as described. Do you think
that this one file was is all thats needed
or should there be some more JARs?<br
class="">
<br class="">
</blockquote>
No the 3i Slidebook JAR should be the only
requirement.<br class="">
<blockquote type="cite" class="">Upload
unfortunately still fails with "file
format not valid", but this time we also
receive an exception which might contain
some further hints (see below). It seems
like it actually tried to read my file but
found some issues with it - the file
itself is fine, at least it opens with
the latest bioformats.<br class="">
<br class="">
</blockquote>
The file format not valid error indicates an
error client-side i.e. during the<br
class="">
detection of the file as a format support by
Bio-Formats.<br class="">
I can see you downloaded the file straight
away from the 3i Fiji update site.<br
class="">
Did you rename the file as xxx.jar before
putting them under your Java<br class="">
folder?<br class="">
<br class="">
Sebastien<br class="">
<blockquote type="cite" class="">We are
still on OMERO5.3.3, could that be
the reason?<br class="">
<br class="">
Thanks for your help and cheers,<br
class="">
Kai<br class="">
<br class="">
<blockquote type="cite" class="">java.lang.IndexOutOfBoundsException: Index:
0, Size: 0 <br class="">
at java.util.ArrayList.rangeCheck(ArrayList.java:653) <br
class="">
at java.util.ArrayList.get(ArrayList.java:429) <br
class="">
at loci.formats.in.SlidebookReader.initFile(SlidebookReader.java:654) <br
class="">
at loci.formats.FormatReader.setId(FormatReader.java:1397) <br
class="">
at loci.formats.ImageReader.setId(ImageReader.java:839) <br
class="">
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650) <br
class="">
at loci.formats.ChannelFiller.setId(ChannelFiller.java:223) <br
class="">
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650) <br
class="">
at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:291) <br
class="">
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650) <br
class="">
at loci.formats.Memoizer.setId(Memoizer.java:649) <br
class="">
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650) <br
class="">
at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:427)<br
class="">
at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:576)<br
class="">
at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:384) <br
class="">
at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:222)<br
class="">
at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:174)<br
class="">
at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportCandidates(OMEROGateway.java:5945)<br
class="">
at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1068)<br
class="">
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:73)<br
class="">
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:48)<br
class="">
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:97)<br
class="">
at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)<br
class="">
at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)<br
class="">
at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)<br
class="">
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)<br
class="">
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)<br
class="">
at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)<br
class="">
at java.lang.Thread.run(Thread.java:748) <br
class="">
<br class="">
at org.openmicroscopy.shoola.env.data.util.StatusLabel.update(StatusLabel.java:671)<br
class="">
at ome.formats.importer.ImportCandidates.safeUpdate(ImportCandidates.java:536)<br
class="">
at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:471)<br
class="">
at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:576)<br
class="">
at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:384) <br
class="">
at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:222)<br
class="">
at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:174)<br
class="">
at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportCandidates(OMEROGateway.java:5945)<br
class="">
at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1068)<br
class="">
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:73)<br
class="">
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:48)<br
class="">
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:97)<br
class="">
at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)<br
class="">
at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)<br
class="">
at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)<br
class="">
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)<br
class="">
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)<br
class="">
at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)<br
class="">
at java.lang.Thread.run(Thread.java:748) <br
class="">
Caused
by: java.lang.IndexOutOfBoundsException: Index:
0, Size: 0 <br class="">
at java.util.ArrayList.rangeCheck(ArrayList.java:653) <br
class="">
at java.util.ArrayList.get(ArrayList.java:429) <br
class="">
at loci.formats.in.SlidebookReader.initFile(SlidebookReader.java:654) <br
class="">
at loci.formats.FormatReader.setId(FormatReader.java:1397) <br
class="">
at loci.formats.ImageReader.setId(ImageReader.java:839) <br
class="">
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650) <br
class="">
at loci.formats.ChannelFiller.setId(ChannelFiller.java:223) <br
class="">
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650) <br
class="">
at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:291) <br
class="">
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650) <br
class="">
at loci.formats.Memoizer.setId(Memoizer.java:649) <br
class="">
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650) <br
class="">
at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:427)<br
class="">
... 16 more<br class="">
</blockquote>
<br class="">
<br class="">
<br class="">
[1] <a class="moz-txt-link-freetext"
href="http://sites.imagej.net/SlideBook/jars/bio-formats/SlideBook6Reader.jar-20161214162742"
moz-do-not-send="true">http://sites.imagej.net/SlideBook/jars/bio-formats/SlideBook6Reader.jar-20161214162742</a> <br
class="">
<br class="">
On 02/09/2018 09:21 AM, Sebastien Besson
(Staff) wrote:<br class="">
<blockquote type="cite"
cite="mid:628D5921-7BE8-4FEC-9B0C-6A07DFC959BA@dundee.ac.uk"
class="">
Hi Kai,<br class="">
<br class="">
thanks for getting back to us. I realise
my initial answer was incomplete to test
the<br class="">
full workflow. In addition to the
server addition, you will also need to
add the third-party<br class="">
JARs to the client you will use for the
import. <br class="">
<br class="">
See [1] for adding JARs to
OMERO.insight. If you are using the CLI,
you need to<br class="">
add your third-party JARs
under lib/client<br class="">
<br class="">
Best,<br class="">
Sebastien<br class="">
<br class="">
[1] <a class="moz-txt-link-freetext"
href="http://help.openmicroscopy.org/configure-client.html#jar"
moz-do-not-send="true">http://help.openmicroscopy.org/configure-client.html#jar</a><br
class="">
<br class="">
<br class="">
<br class="">
<blockquote type="cite" class="">On 8
Feb 2018, at 13:56, Kai Schleicher <a
class="moz-txt-link-rfc2396E"
href="mailto:kai.schleicher@unibas.ch"
moz-do-not-send="true">
<kai.schleicher@unibas.ch></a> wrote:<br
class="">
<br class="">
Hi Sebastien,<br class="">
<br class="">
thanks for your help!<br class="">
<br class="">
We have tried and put the jar file
under lib/server and restarted
the server. However, that seems to
not have been enough - upload of
*.sld files still fails.<br class="">
<br class="">
Probably we missed additional steps,
but unfortunately it is not too clear
to us right now what else needs to
happen. Are there additional files
that need to be placed at
other locations? <br class="">
Sorry for the vague question...<br
class="">
<br class="">
If you have some more details on
that would be greatly appreciated :)<br
class="">
<br class="">
Thanks and cheers,<br class="">
Kai<br class="">
<br class="">
On 02/06/2018 06:01 PM, Sebastien
Besson (Staff) wrote:<br class="">
<blockquote type="cite"
cite="mid:6F15D1CF-4BC8-4AE1-AC2D-721D729E3D16@dundee.ac.uk"
class="">
Hi Kai,<br class="">
<br class="">
<div class="">Since Bio-Formats
5.2.0, the native support for 3i
Slidebook</div>
<div class=""> files is indeed
provided via a external
third-party JAR developed and
maintained by Intelligent Imaging
[1]. In Fiji, the installation of
this JAR is managed via the
Slidebook update site maintained
by 3i.</div>
<br class="">
<br class="">
<div class="">Adding support for
this reader in OMERO should work</div>
<div class=""> the same way as other
server extensions [2]. The
critical part is to have the
Slidebook classes available to the
server, typically by putting the
appropriate JAR under lib/server
and restarting the latter.</div>
<br class="">
<br class="">
<div class="">It would be really
interesting to hear from the 3i
developer</div>
<div class=""> or support team
whether they have tested this
workflow or if they have plans to
support it in the future.</div>
<br class="">
Best,<br class="">
Sebastien<br class="">
<br class="">
<div class="">[1]</div>
<br
class="Apple-interchange-newline">
<a class="moz-txt-link-freetext"
href="http://blog.openmicroscopy.org/file-formats/community/2016/08/31/bf-partnerships/"
moz-do-not-send="true">http://blog.openmicroscopy.org/file-formats/community/2016/08/31/bf-partnerships/</a><br
class="">
<div class="">[2]</div>
<br
class="Apple-interchange-newline">
<a class="moz-txt-link-freetext"
href="https://docs.openmicroscopy.org/omero/5.4.3/developers/Server/ExtendingOmero.html"
moz-do-not-send="true">https://docs.openmicroscopy.org/omero/5.4.3/developers/Server/ExtendingOmero.html</a><br
class="">
<br class="">
<br class="">
<blockquote type="cite" class="">On 5
Feb 2018, at 12:26,
Kai Schleicher <a
class="moz-txt-link-rfc2396E"
href="mailto:kai.schleicher@unibas.ch"
moz-do-not-send="true"><kai.schleicher@unibas.ch></a> wrote:<br
class="">
<br class="">
Dear OME team,<br class="">
<br class="">
I'd like to import slidebook *.sld
files in OMERO.<br class="">
<br class="">
Since Bio-Formats relies on
a plugin from an external update
site [1] to enable import
of SlideBook SLD files, I
was wondering if there is a way to
integrate this plugin into our
OMERO as well?<br class="">
<br class="">
Thanks and cheers,<br class="">
Kai<br class="">
<br class="">
[1]: <a
class="moz-txt-link-freetext"
href="http://sites.imagej.net/SlideBook/"
moz-do-not-send="true">http://sites.imagej.net/SlideBook/</a><br
class="">
<br class="">
-- <br class="">
<blockquote type="cite" class="">
<blockquote type="cite" class="">Please note
my NEW PHONE NUMBERS: +41 61
207 57 31 (direct) +41 61 207
22 50 (central)<<<br
class="">
</blockquote>
</blockquote>
Kai Schleicher, PhD |
Research Associate in Advanced
Light Microscopy
| Biozentrum, University of Basel
| Klingelbergstrasse 50/70
| CH-4056 Basel |<br class="">
Phone: +41 61 207 57 31 (direct)
+41 61 207 22 50 (central) | <a
class="moz-txt-link-abbreviated"
href="mailto:kai.schleicher@unibas.ch" moz-do-not-send="true">kai.schleicher@unibas.ch</a> | <a
class="moz-txt-link-abbreviated"
href="http://www.biozentrum.unibas.ch" moz-do-not-send="true">www.biozentrum.unibas.ch</a> | <a
class="moz-txt-link-abbreviated"
href="http://www.microscopynetwork.unibas.ch" moz-do-not-send="true">www.microscopynetwork.unibas.ch</a><br
class="">
<br class="">
_______________________________________________<br class="">
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class="">
</blockquote>
<br class="">
<br class="">
The University of Dundee is
a registered Scottish Charity, No:
SC015096 <br class="">
<br class="">
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class="Apple-interchange-newline">
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<br class="">
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class="">
</blockquote>
<br class="">
<br class="">
The University of Dundee is a
registered Scottish Charity, No:
SC015096 <br class="">
<br class="">
<div class="">_______________________________________________</div>
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class="">
</blockquote>
<br class="">
</blockquote>
<br class="">
<br class="">
The University of Dundee is a
registered Scottish Charity, No: SC015096<br
class="">
</blockquote>
<br class="">
</blockquote>
<br class="">
<br class="">
The University of Dundee is a registered
Scottish Charity, No: SC015096<br class="">
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class="">
ome-users mailing list<br class="">
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class="">
</blockquote>
<br class="">
<br class="">
The University of Dundee is a registered Scottish
Charity, No: SC015096<br class="">
</blockquote>
<br class="">
<span
id="cid:5F33C363-3EE7-4CCA-B309-5DD65C5EEBC6@ed.ac.uk"><Screenshot
from 2018-02-13 14-09-55.png></span><br
class="">
</blockquote>
</span><br class="">
</div>
<br>
<span style="font-size:10pt;">The University of Dundee is
a registered Scottish Charity, No: SC015096</span></blockquote>
<br>
</div>
</div>
</span><br>
<span style="font-size:10pt;">The University of Dundee is a
registered Scottish Charity, No: SC015096</span>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
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