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Hi Christian,
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<div class="">Thank you for providing the sample file. I was able to reproduce the issue as you described and have begun debugging into it further.</div>
<div class="">I have created a Trello card with the details on the Bio-Formats Trello inbox: <a href="https://trello.com/c/2UO8mMc9/215-imaris-netcdf-getimage-is-null" class="">https://trello.com/c/2UO8mMc9/215-imaris-netcdf-getimage-is-null</a></div>
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<div class="">With Thanks,</div>
<div class="">David Gault</div>
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<div class="">On 23 Jan 2018, at 17:50, Christian Tischer <<a href="mailto:Christian.Tischer@EMBL.DE" class="">Christian.Tischer@EMBL.DE</a>> wrote:</div>
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In attached folder there is a file called <b class="">meta.ims</b>.<br class="">
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This opens fine with <br class="">
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1. Imaris 9.0.1 <br class="">
2. Fiji > Plugins > BigDataViewer > Open Imaris<br class="">
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However using BioFormatsImporter in Fiji it throws below error:<br class="">
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loci.formats.FormatException: Unknown pixel type: null<br class="">
at loci.formats.in.ImarisHDFReader.initFile(ImarisHDFReader.java:318)<br class="">
at loci.formats.FormatReader.setId(FormatReader.java:1397)<br class="">
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:498)<br class="">
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:141)<br class="">
at loci.plugins.in.Importer.showDialogs(Importer.java:140)<br class="">
at loci.plugins.in.Importer.run(Importer.java:76)<br class="">
at loci.plugins.LociImporter.run(LociImporter.java:78)<br class="">
at ij.IJ.runUserPlugIn(IJ.java:221)<br class="">
at ij.IJ.runPlugIn(IJ.java:185)<br class="">
at ij.Executer.runCommand(Executer.java:137)<br class="">
at ij.Executer.run(Executer.java:66)<br class="">
at java.lang.Thread.run(Thread.java:745)<br class="">
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<div class="">Could you maybe have a look at this?<br class="">
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<div class="">(The file is written using my own Imaris Writer...)<br class="">
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<p class="">Christian<br class="">
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