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Hi James,

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</div>

<div class="">it sounds like you are encountering the conflicting JARs issues described in this</div>

<div class="">thread [1].</div>

<div class="">Which update sites do you have currently enabled? If both Fiji-legacy and Java-8</div>

<div class="">are enabled, could you try to disable the Fiji-legacy update site and see if it </div>

<div class="">resolves the issue?</div>

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</div>

<div class="">Best,</div>

<div class="">Sebastien</div>

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</div>

<div class="">[1] <a href="http://forum.imagej.net/t/fiji-and-bioformats-conflicting-jars/5736/7" class="">

http://forum.imagej.net/t/fiji-and-bioformats-conflicting-jars/5736/7</a></div>

<div class=""><br class="">

<div class=""><br class="">

<div>

<blockquote type="cite" class="">

<div class="">On 19 Jan 2018, at 12:53, James Wainwright <<a href="mailto:jimboesq@gmail.com" class="">jimboesq@gmail.com</a>> wrote:</div>

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<div class="">

<div dir="ltr" class="">Hi Bio-Formats team!

<div class=""><br class="">

</div>

<div class="">I've just tried to load an Andor TIFF file into FIJI, but it produces a huge error message, which I will copy below.</div>

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</div>

<div class="">I have uploaded a sample datatset - "1 - Stream Defaults.tif" on the QA website.</div>

<div class=""><br class="">

</div>

<div class="">Could you let me know if this is a Bio-Formats problem or an install problem on my side? I've run FIJI updater.</div>

<div class=""><br class="">

</div>

<div class="">Thanks as always!</div>

<div class=""><br class="">

</div>

<div class="">James</div>

<div class=""><br class="">

</div>

<div class="">(Apps Specialist, Andor Technology)</div>

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</div>

<div class=""><br class="">

</div>

<div class=""><br class="">

</div>

<div class=""><br class="">

</div>

<div class=""><br class="">

</div>

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</div>

<div class="">

<div class="">There was a problem with the class loci.common.RandomAccessInputStream which can be found here:</div>

<div class="">/C:/Fiji.app/jars/bio-formats/formats-common-5.1.10.jar</div>

<div class="">/C:/Fiji.app/jars/bio-formats/ome-common-5.3.3.jar</div>

<div class=""><br class="">

</div>

<div class="">WARNING: multiple locations found!</div>

<div class="">java.lang.NoSuchMethodError: loci.common.RandomAccessInputStream.readUnsignedInt()J</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.tiff.TiffParser.getNextOffset(TiffParser.java:1257)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.tiff.TiffParser.getFirstOffset(TiffParser.java:366)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.tiff.TiffParser.getFirstIFD(TiffParser.java:320)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.in.SEQReader.isThisType(SEQReader.java:73)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.FormatReader.isThisType(FormatReader.java:615)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.ImageReader.getReader(ImageReader.java:185)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.in.ImportProcess.createBaseReader(ImportProcess.java:618)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.in.ImportProcess.initializeReader(ImportProcess.java:484)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.in.ImportProcess.execute(ImportProcess.java:137)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.in.Importer.showDialogs(Importer.java:140)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.in.Importer.run(Importer.java:76)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.LociImporter.run(LociImporter.java:78)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.IJ.runUserPlugIn(IJ.java:221)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.IJ.runPlugIn(IJ.java:185)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.Executer.runCommand(Executer.java:137)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.Executer.run(Executer.java:66)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.IJ.run(IJ.java:301)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.IJ.run(IJ.java:276)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.Functions.doRun(Functions.java:604)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.Functions.doFunction(Functions.java:96)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.Interpreter.doStatement(Interpreter.java:247)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.Interpreter.doBlock(Interpreter.java:630)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.Interpreter.runMacro(Interpreter.java:156)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.MacroRunner.run(MacroRunner.java:152)</div>

<div class=""><span style="white-space:pre" class=""></span>at java.lang.Thread.run(Thread.java:745)</div>

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</div>

<div class="">[ERROR] null</div>

<div class="">java.lang.NoSuchMethodException: Could not find method loci.common.RandomAccessInputStream.readUnsignedInt()J</div>

<div class="">There was a problem with the class loci.common.RandomAccessInputStream which can be found here:</div>

<div class="">/C:/Fiji.app/jars/bio-formats/formats-common-5.1.10.jar</div>

<div class="">/C:/Fiji.app/jars/bio-formats/ome-common-5.3.3.jar</div>

<div class=""><br class="">

</div>

<div class="">WARNING: multiple locations found!</div>

<div class="">java.lang.NoSuchMethodError: loci.common.RandomAccessInputStream.readUnsignedInt()J</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.tiff.TiffParser.getNextOffset(TiffParser.java:1257)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.tiff.TiffParser.getFirstOffset(TiffParser.java:366)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.tiff.TiffParser.getFirstIFD(TiffParser.java:320)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.in.SEQReader.isThisType(SEQReader.java:73)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.FormatReader.isThisType(FormatReader.java:615)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.ImageReader.getReader(ImageReader.java:185)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.in.ImportProcess.createBaseReader(ImportProcess.java:618)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.in.ImportProcess.initializeReader(ImportProcess.java:484)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.in.ImportProcess.execute(ImportProcess.java:137)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.in.Importer.showDialogs(Importer.java:140)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.in.Importer.run(Importer.java:76)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.LociImporter.run(LociImporter.java:78)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.IJ.runUserPlugIn(IJ.java:221)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.IJ.runPlugIn(IJ.java:185)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.Executer.runCommand(Executer.java:137)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.Executer.run(Executer.java:66)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.IJ.run(IJ.java:301)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.IJ.run(IJ.java:276)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.Functions.doRun(Functions.java:604)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.Functions.doFunction(Functions.java:96)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.Interpreter.doStatement(Interpreter.java:247)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.Interpreter.doBlock(Interpreter.java:630)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.Interpreter.runMacro(Interpreter.java:156)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.MacroRunner.run(MacroRunner.java:152)</div>

<div class=""><span style="white-space:pre" class=""></span>at java.lang.Thread.run(Thread.java:745)</div>

<div class=""><br class="">

</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.tiff.TiffParser.getNextOffset(TiffParser.java:1257)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.tiff.TiffParser.getFirstOffset(TiffParser.java:366)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.tiff.TiffParser.getFirstIFD(TiffParser.java:320)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.in.SEQReader.isThisType(SEQReader.java:73)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.FormatReader.isThisType(FormatReader.java:615)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.formats.ImageReader.getReader(ImageReader.java:185)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.in.ImportProcess.createBaseReader(ImportProcess.java:618)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.in.ImportProcess.initializeReader(ImportProcess.java:484)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.in.ImportProcess.execute(ImportProcess.java:137)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.in.Importer.showDialogs(Importer.java:140)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.in.Importer.run(Importer.java:76)</div>

<div class=""><span style="white-space:pre" class=""></span>at loci.plugins.LociImporter.run(LociImporter.java:78)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.IJ.runUserPlugIn(IJ.java:221)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.IJ.runPlugIn(IJ.java:185)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.Executer.runCommand(Executer.java:137)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.Executer.run(Executer.java:66)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.IJ.run(IJ.java:301)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.IJ.run(IJ.java:276)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.Functions.doRun(Functions.java:604)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.Functions.doFunction(Functions.java:96)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.Interpreter.doStatement(Interpreter.java:247)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.Interpreter.doBlock(Interpreter.java:630)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.Interpreter.runMacro(Interpreter.java:156)</div>

<div class=""><span style="white-space:pre" class=""></span>at ij.macro.MacroRunner.run(MacroRunner.java:152)</div>

<div class=""><span style="white-space:pre" class=""></span>at java.lang.Thread.run(Thread.java:745)</div>

</div>

<div class=""><br class="">

</div>

</div>

_______________________________________________<br class="">

ome-users mailing list<br class="">

<a href="mailto:ome-users@lists.openmicroscopy.org.uk" class="">ome-users@lists.openmicroscopy.org.uk</a><br class="">

http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users<br class="">

</div>

</blockquote>

</div>

<br class="">

</div>

</div>

<br>

<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>

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