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Hi Nick,
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<div class="">Thank you for providing the sample files for testing. There are a few different messages in the log provided, I will try and briefly explain each of these and the possible ramifications they may have on the imported file.</div>
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<div class="">With the files provided the SAXParseException is being thrown when the embedded Description tag is attempted to be parsed as XML. If the Description is not XML then Bio-Formats handles this by adding the value to the series metadata, in the case
of the sample files provided this will show in the metadata as “Description = overview”. This particular warning should have no negative effects on the parsed metadata.</div>
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</div>
<div class="">The SAXParser warnings for features and properties not being recognised are related to certain versions of the Xerces library. These warnings can be ignored from your perspective and will not impact on the parsing of metadata values.</div>
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</div>
<div class="">Finally the validation error reported as duplicate key entries is occurring when attempting to parse OME-XML which is embedded in the file. If the embedded XML is valid then Bio-Formats will parse and use the data provided, however in this particular
case the XML is not valid due to each of the 4 channels having an identical ID. If the embedded XML is not valid then Bio-Formats will attempt to read the file and rebuild a valid OME-XML metadata. In this particular scenario comparing the values of the embedded
XML and the new generated XML show that the results are very similar and that the metadata for the file appears to have been read and generated successfully. The important difference would be the valid unique ID values now being used for each channel as shown
below:</div>
<div class=""><span class="Apple-tab-span" style="white-space:pre"></span></div>
<div class=""><span class="Apple-tab-span" style="white-space:pre"></span><Channel ID=“Channel:0:0” SamplesPerPixel=“1”><LightPath/></Channel></div>
<div class=""><span class="Apple-tab-span" style="white-space:pre"></span><Channel ID=“Channel:1:0” SamplesPerPixel=“1”><LightPath/></Channel></div>
<div class=""><span class="Apple-tab-span" style="white-space:pre"></span><Channel ID=“Channel:2:0” SamplesPerPixel=“1”><LightPath/></Channel></div>
<div class=""><span class="Apple-tab-span" style="white-space:pre"></span><Channel ID=“Channel:3:0” SamplesPerPixel=“1”><LightPath/></Channel></div>
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</div>
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</div>
<div class="">With Thanks,</div>
<div class="">David Gault</div>
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<div>
<blockquote type="cite" class="">
<div class="">On 8 Jan 2018, at 16:03, Nick Petersen <<a href="mailto:EPeterse@scripps.edu" class="">EPeterse@scripps.edu</a>> wrote:</div>
<br class="Apple-interchange-newline">
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<div class="WordSection1" style="page: WordSection1; font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;">
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
I am using the most updated version of the Abberior STED microscope software and I’m getting the following errors when I try and import the files:<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[WARN] Could not parse description as XML<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
org.xml.sax.SAXParseException: Content is not allowed in prolog.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at org.apache.xerces.parsers.DOMParser.parse(Unknown Source)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at org.apache.xerces.jaxp.DocumentBuilderImpl.parse(Unknown Source)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:121)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.common.xml.XMLTools.parseDOM(XMLTools.java:215)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.common.xml.XMLTools.parseDOM(XMLTools.java:196)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.in.OBFReader.initStack(OBFReader.java:379)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.in.OBFReader.initFile(OBFReader.java:184)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.FormatReader.setId(FormatReader.java:1397)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:498)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:141)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.in.Importer.showDialogs(Importer.java:140)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.in.Importer.run(Importer.java:76)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.LociImporter.run(LociImporter.java:78)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runUserPlugIn(IJ.java:221)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runPlugIn(IJ.java:185)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runPlugIn(IJ.java:174)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:499)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at HandleExtraFileTypes.run(HandleExtraFileTypes.java:72)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runUserPlugIn(IJ.java:221)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runPlugIn(IJ.java:185)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runPlugIn(IJ.java:174)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:515)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openImage(Opener.java:369)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openImage(Opener.java:242)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.open(Opener.java:109)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openAndAddToRecent(Opener.java:291)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:192)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.plugin.DragAndDrop.run(DragAndDrop.java:159)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at java.lang.Thread.run(Thread.java:745)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Warning: org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser: Property '<a href="http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit'" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit'</a>is
not recognized.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Warning: org.apache.xerces.parsers.SAXParser: Feature '<a href="http://javax.xml.xmlconstants/feature/secure-processing'" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://javax.xml.XMLConstants/feature/secure-processing'</a><span class="Apple-converted-space"> </span>is
not recognized.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Warning: org.apache.xerces.parsers.SAXParser: Property '<a href="http://javax.xml.xmlconstants/property/accessExternalDTD'" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://javax.xml.XMLConstants/property/accessExternalDTD'</a><span class="Apple-converted-space"> </span>is
not recognized.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Warning: org.apache.xerces.parsers.SAXParser: Property '<a href="http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit'" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit'</a><span class="Apple-converted-space"> </span>is
not recognized.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Parsing schema path<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<a href="http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd</a><o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Validating OME-XML<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[ERROR] cvc-identity-constraint.4.2.2: Duplicate key value [Channel:1] declared for identity constraint "ChannelIDKey" of element "OME".<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[ERROR] cvc-identity-constraint.4.2.2: Duplicate key value [Channel:1] declared for identity constraint "ChannelIDKey" of element "OME".<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[ERROR] cvc-identity-constraint.4.2.2: Duplicate key value [Channel:1] declared for identity constraint "ChannelIDKey" of element "OME".<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Error validating document: 3 errors found<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Reading header<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Finding image offsets<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[WARN] Unknown Immersion value 'null' will be stored as "Other"<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[WARN] Unknown Correction value 'null' will be stored as "Other"<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[WARN] Unknown Immersion value 'null' will be stored as "Other"<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[WARN] Unknown Correction value 'null' will be stored as "Other"<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[WARN] Unknown Immersion value 'null' will be stored as "Other"<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[WARN] Unknown Correction value 'null' will be stored as "Other"<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[WARN] Unknown Immersion value 'null' will be stored as "Other"<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[WARN] Unknown Correction value 'null' will be stored as "Other"<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[WARN] Could not parse description as XML<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
org.xml.sax.SAXParseException: Content is not allowed in prolog.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at org.apache.xerces.parsers.DOMParser.parse(Unknown Source)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at org.apache.xerces.jaxp.DocumentBuilderImpl.parse(Unknown Source)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:121)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.common.xml.XMLTools.parseDOM(XMLTools.java:215)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.common.xml.XMLTools.parseDOM(XMLTools.java:196)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.in.OBFReader.initStack(OBFReader.java:379)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.in.OBFReader.initFile(OBFReader.java:184)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.FormatReader.setId(FormatReader.java:1397)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:498)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:141)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.in.Importer.showDialogs(Importer.java:140)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.in.Importer.run(Importer.java:76)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.LociImporter.run(LociImporter.java:78)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runUserPlugIn(IJ.java:221)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runPlugIn(IJ.java:185)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runPlugIn(IJ.java:174)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:499)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at HandleExtraFileTypes.run(HandleExtraFileTypes.java:72)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runUserPlugIn(IJ.java:221)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runPlugIn(IJ.java:185)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runPlugIn(IJ.java:174)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:515)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openImage(Opener.java:369)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openImage(Opener.java:242)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.open(Opener.java:109)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openAndAddToRecent(Opener.java:291)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:192)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.plugin.DragAndDrop.run(DragAndDrop.java:159)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at java.lang.Thread.run(Thread.java:745)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Warning: org.apache.xerces.parsers.SAXParser: Feature '<a href="http://javax.xml.xmlconstants/feature/secure-processing'" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://javax.xml.XMLConstants/feature/secure-processing'</a><span class="Apple-converted-space"> </span>is
not recognized.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Warning: org.apache.xerces.parsers.SAXParser: Property '<a href="http://javax.xml.xmlconstants/property/accessExternalDTD'" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://javax.xml.XMLConstants/property/accessExternalDTD'</a><span class="Apple-converted-space"> </span>is
not recognized.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Warning: org.apache.xerces.parsers.SAXParser: Property '<a href="http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit'" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit'</a><span class="Apple-converted-space"> </span>is
not recognized.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Parsing schema path<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<a href="http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd</a><o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Validating OME-XML<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[ERROR] cvc-identity-constraint.4.2.2: Duplicate key value [Channel:1] declared for identity constraint "ChannelIDKey" of element "OME".<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[ERROR] cvc-identity-constraint.4.2.2: Duplicate key value [Channel:1] declared for identity constraint "ChannelIDKey" of element "OME".<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[ERROR] cvc-identity-constraint.4.2.2: Duplicate key value [Channel:1] declared for identity constraint "ChannelIDKey" of element "OME".<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Error validating document: 3 errors found<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[WARN] Could not parse description as XML<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
org.xml.sax.SAXParseException: Content is not allowed in prolog.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at org.apache.xerces.parsers.DOMParser.parse(Unknown Source)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at org.apache.xerces.jaxp.DocumentBuilderImpl.parse(Unknown Source)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:121)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.common.xml.XMLTools.parseDOM(XMLTools.java:215)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.common.xml.XMLTools.parseDOM(XMLTools.java:196)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.in.OBFReader.initStack(OBFReader.java:379)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.in.OBFReader.initFile(OBFReader.java:184)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.FormatReader.setId(FormatReader.java:1397)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:498)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:141)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.in.Importer.showDialogs(Importer.java:140)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.in.Importer.run(Importer.java:76)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.LociImporter.run(LociImporter.java:78)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runUserPlugIn(IJ.java:221)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runPlugIn(IJ.java:185)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runPlugIn(IJ.java:174)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:499)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at HandleExtraFileTypes.run(HandleExtraFileTypes.java:72)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runUserPlugIn(IJ.java:221)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runPlugIn(IJ.java:185)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runPlugIn(IJ.java:174)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:515)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openImage(Opener.java:369)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openImage(Opener.java:242)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.open(Opener.java:109)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openAndAddToRecent(Opener.java:291)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:192)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.plugin.DragAndDrop.run(DragAndDrop.java:159)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at java.lang.Thread.run(Thread.java:745)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Warning: org.apache.xerces.parsers.SAXParser: Feature '<a href="http://javax.xml.xmlconstants/feature/secure-processing'" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://javax.xml.XMLConstants/feature/secure-processing'</a><span class="Apple-converted-space"> </span>is
not recognized.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Warning: org.apache.xerces.parsers.SAXParser: Property '<a href="http://javax.xml.xmlconstants/property/accessExternalDTD'" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://javax.xml.XMLConstants/property/accessExternalDTD'</a><span class="Apple-converted-space"> </span>is
not recognized.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Warning: org.apache.xerces.parsers.SAXParser: Property '<a href="http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit'" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit'</a><span class="Apple-converted-space"> </span>is
not recognized.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Parsing schema path<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<a href="http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd</a><o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Validating OME-XML<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[ERROR] cvc-identity-constraint.4.2.2: Duplicate key value [Channel:1] declared for identity constraint "ChannelIDKey" of element "OME".<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[ERROR] cvc-identity-constraint.4.2.2: Duplicate key value [Channel:1] declared for identity constraint "ChannelIDKey" of element "OME".<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[ERROR] cvc-identity-constraint.4.2.2: Duplicate key value [Channel:1] declared for identity constraint "ChannelIDKey" of element "OME".<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Error validating document: 3 errors found<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[WARN] Could not parse description as XML<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
org.xml.sax.SAXParseException: Content is not allowed in prolog.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at org.apache.xerces.parsers.DOMParser.parse(Unknown Source)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at org.apache.xerces.jaxp.DocumentBuilderImpl.parse(Unknown Source)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at javax.xml.parsers.DocumentBuilder.parse(DocumentBuilder.java:121)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.common.xml.XMLTools.parseDOM(XMLTools.java:215)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.common.xml.XMLTools.parseDOM(XMLTools.java:196)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.in.OBFReader.initStack(OBFReader.java:379)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.in.OBFReader.initFile(OBFReader.java:184)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.formats.FormatReader.setId(FormatReader.java:1397)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:498)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:141)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.in.Importer.showDialogs(Importer.java:140)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.in.Importer.run(Importer.java:76)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at loci.plugins.LociImporter.run(LociImporter.java:78)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runUserPlugIn(IJ.java:221)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runPlugIn(IJ.java:185)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runPlugIn(IJ.java:174)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:499)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at HandleExtraFileTypes.run(HandleExtraFileTypes.java:72)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runUserPlugIn(IJ.java:221)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runPlugIn(IJ.java:185)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.IJ.runPlugIn(IJ.java:174)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:515)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openImage(Opener.java:369)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openImage(Opener.java:242)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.open(Opener.java:109)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openAndAddToRecent(Opener.java:291)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:192)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.plugin.DragAndDrop.run(DragAndDrop.java:159)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at java.lang.Thread.run(Thread.java:745)<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Warning: org.apache.xerces.parsers.SAXParser: Feature '<a href="http://javax.xml.xmlconstants/feature/secure-processing'" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://javax.xml.XMLConstants/feature/secure-processing'</a><span class="Apple-converted-space"> </span>is
not recognized.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Warning: org.apache.xerces.parsers.SAXParser: Property '<a href="http://javax.xml.xmlconstants/property/accessExternalDTD'" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://javax.xml.XMLConstants/property/accessExternalDTD'</a><span class="Apple-converted-space"> </span>is
not recognized.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Warning: org.apache.xerces.parsers.SAXParser: Property '<a href="http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit'" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit'</a><span class="Apple-converted-space"> </span>is
not recognized.<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Parsing schema path<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<a href="http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd</a><o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Validating OME-XML<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[ERROR] cvc-identity-constraint.4.2.2: Duplicate key value [Channel:1] declared for identity constraint "ChannelIDKey" of element "OME".<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[ERROR] cvc-identity-constraint.4.2.2: Duplicate key value [Channel:1] declared for identity constraint "ChannelIDKey" of element "OME".<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
[ERROR] cvc-identity-constraint.4.2.2: Duplicate key value [Channel:1] declared for identity constraint "ChannelIDKey" of element "OME".<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Error validating document: 3 errors found<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
I have updated Bio-Formats to the most recent version (5.7.2) and still get this error. The images still open but I’m not sure if I’m losing more than metadata from the errors above. I have also updated Java to ensure the problem wasn’t there. I have attached
2 example files to replicate the issue<o:p class=""></o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<o:p class=""> </o:p></div>
<div style="margin: 0in 0in 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
Thanks for the help!<o:p class=""></o:p></div>
</div>
<span id="cid:A2C42A8E-486A-4161-8FD3-E285A3FE1C5F"><MSR files.zip></span><span style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">_______________________________________________</span><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<span style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">ome-users
mailing list</span><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<a href="mailto:ome-users@lists.openmicroscopy.org.uk" style="color: rgb(149, 79, 114); text-decoration: underline; font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">ome-users@lists.openmicroscopy.org.uk</a><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users" style="color: rgb(149, 79, 114); text-decoration: underline; font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a></div>
</blockquote>
</div>
<br class="">
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<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
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