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<p>Dear OME team,</p>
<p>I have come across a couple of <a moz-do-not-send="true"
href="https://filesender.switch.ch/filesender/?vid=04329d13-fe8b-93c9-b234-000076047e49">user
images</a> which don't import properly into OMERO as they are
not read by the Bio-formats, see quoted error message below:</p>
<p>
<blockquote type="cite">loci.formats.FormatException: Unmatched
UUID: urn:uuid:faa8d48e-8cd2-414a-a041-1a9bc24e8cec<br>
at
loci.formats.in.OMETiffReader.initFile(OMETiffReader.java:616)<br>
at loci.formats.FormatReader.setId(FormatReader.java:1397)<br>
at
loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:498)<br>
at
loci.plugins.in.ImportProcess.execute(ImportProcess.java:141)<br>
at loci.plugins.in.Importer.showDialogs(Importer.java:140)<br>
at loci.plugins.in.Importer.run(Importer.java:76)<br>
at loci.plugins.LociImporter.run(LociImporter.java:78)<br>
at ij.IJ.runUserPlugIn(IJ.java:217)<br>
at ij.IJ.runPlugIn(IJ.java:181)<br>
at ij.Executer.runCommand(Executer.java:137)<br>
at ij.Executer.run(Executer.java:66)<br>
at ij.IJ.run(IJ.java:297)<br>
at ij.IJ.run(IJ.java:272)<br>
at ij.macro.Functions.doRun(Functions.java:603)<br>
at ij.macro.Functions.doFunction(Functions.java:96)<br>
at ij.macro.Interpreter.doStatement(Interpreter.java:230)<br>
at ij.macro.Interpreter.doStatements(Interpreter.java:218)<br>
at ij.macro.Interpreter.run(Interpreter.java:115)<br>
at ij.macro.Interpreter.run(Interpreter.java:85)<br>
at ij.macro.MacroRunner.run(MacroRunner.java:139)<br>
at java.lang.Thread.run(Thread.java:745)<br>
</blockquote>
It's unfortunately unclear how the images came about, but
apparently these are several tiles imaged on a LSM700, later on
stitched using the grid/collection stitcher in FIJI and finally
saved in one file per channel (two, in this case)<br>
</p>
<p>The individual channel images open fine with the normal file
-> open from FIJI.<br>
</p>
<p>When opening the image in FIJI and checking the info (ctrl-i) I
did actually find the "unmatched"
urn:uuid:faa8d48e-8cd2-414a-a041-1a9bc24e8cec in the ome-xml
metadata block.<br>
</p>
<p>Is there maybe something else missing, i.e is the set of images
not complete?</p>
<p>Thanks for your help and cheers,<br>
Kai<br>
</p>
<pre class="moz-signature" cols="72">--
>>Please note my NEW PHONE NUMBERS: +41 61 207 57 31 (direct) +41 61 207 22 50 (central)<<
Kai Schleicher, PhD | Research Associate in Advanced Light Microscopy | Biozentrum, University of Basel | Klingelbergstrasse 50/70 | CH-4056 Basel |
Phone: +41 61 207 57 31 (direct) +41 61 207 22 50 (central) | <a class="moz-txt-link-abbreviated" href="mailto:kai.schleicher@unibas.ch">kai.schleicher@unibas.ch</a> | <a class="moz-txt-link-abbreviated" href="http://www.biozentrum.unibas.ch">www.biozentrum.unibas.ch</a> | <a class="moz-txt-link-abbreviated" href="http://www.microscopynetwork.unibas.ch">www.microscopynetwork.unibas.ch</a></pre>
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