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Hi Alejandro,
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</div>
<div class="">given the Java version indicated in your error message, I suspect you are using</div>
<div class="">Bio-Formats 5.1.10 or older since this the last version of Bio-Formats which</div>
<div class="">supports Java 6.</div>
<div class=""><br class="">
</div>
<div class="">We had previous reports of this error which should has been fixed in more recent</div>
<div class="">versions of the Bio-formats plugin. To be able to use it, you will need to upgrade your</div>
<div class="">Fiji distribution to use the version bundled Java 8 and activate the Java-8 update site. [1]</div>
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</div>
<div class="">Best,</div>
<div class="">Sebastien</div>
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</div>
<div class="">[1] <a href="https://imagej.net/2016-05-10_-_ImageJ_HOWTO_-_Java_8,_Java_6,_Java_3D" class="">https://imagej.net/2016-05-10_-_ImageJ_HOWTO_-_Java_8,_Java_6,_Java_3D</a> </div>
<div class=""><br class="">
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<blockquote type="cite" class="">
<div class="">On 25 Oct 2017, at 02:19, Alejandro Pedro Pariani <<a href="mailto:apariani846@gmail.com" class="">apariani846@gmail.com</a>> wrote:</div>
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<div class="WordSection1" style="page: WordSection1; font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;">
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<o:p class=""> </o:p></div>
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Hi,</div>
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<span style="" class="">can't get bioformats to open some czi files captured on a new Zeiss<o:p class=""></o:p></span></div>
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<span style="" class="">LSM880. I've tried to do so using Fiji and ImageJ</span><span style="font-size: 10pt;" class=""><o:p class=""></o:p></span></div>
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<span style="" class="">Example error message below:</span><span style="font-size: 10pt;" class=""><o:p class=""></o:p></span></div>
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<o:p class=""> </o:p></div>
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(Fiji Is Just) ImageJ 2.0.0-rc-43/1.51r; Java 1.6.0_24 [64-bit]; Windows NT (unknown) 6.2; 25MB of 4509MB (<1%)<o:p class=""></o:p></div>
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<o:p class=""></o:p></div>
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java.lang.NumberFormatException: null<o:p class=""></o:p></div>
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at java.lang.Integer.parseInt(Integer.java:417)<o:p class=""></o:p></div>
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at java.lang.Integer.parseInt(Integer.java:499)<o:p class=""></o:p></div>
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at loci.formats.in.ZeissCZIReader.translateExperiment(ZeissCZIReader.java:2268)<o:p class=""></o:p></div>
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at loci.formats.in.ZeissCZIReader.translateMetadata(ZeissCZIReader.java:1329)<o:p class=""></o:p></div>
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at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:731)<o:p class=""></o:p></div>
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at loci.formats.FormatReader.setId(FormatReader.java:1426)<o:p class=""></o:p></div>
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at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)<o:p class=""></o:p></div>
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at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)<o:p class=""></o:p></div>
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at loci.plugins.in.Importer.showDialogs(Importer.java:140)<o:p class=""></o:p></div>
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at loci.plugins.in.Importer.run(Importer.java:76)<o:p class=""></o:p></div>
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at loci.plugins.LociImporter.run(LociImporter.java:78)<o:p class=""></o:p></div>
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at ij.IJ.runUserPlugIn(IJ.java:221)<o:p class=""></o:p></div>
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at ij.IJ.runPlugIn(IJ.java:185)<o:p class=""></o:p></div>
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at ij.IJ.runPlugIn(IJ.java:174)<o:p class=""></o:p></div>
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at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:499)<o:p class=""></o:p></div>
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at HandleExtraFileTypes.run(HandleExtraFileTypes.java:72)<o:p class=""></o:p></div>
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at ij.IJ.runUserPlugIn(IJ.java:221)<o:p class=""></o:p></div>
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at ij.IJ.runPlugIn(IJ.java:185)<o:p class=""></o:p></div>
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at ij.IJ.runPlugIn(IJ.java:174)<o:p class=""></o:p></div>
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at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:514)<o:p class=""></o:p></div>
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at ij.io.Opener.openImage(Opener.java:368)<o:p class=""></o:p></div>
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at ij.io.Opener.openImage(Opener.java:242)<o:p class=""></o:p></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.open(Opener.java:109)<o:p class=""></o:p></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.io.Opener.openAndAddToRecent(Opener.java:291)<o:p class=""></o:p></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:192)<o:p class=""></o:p></div>
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at ij.plugin.DragAndDrop.run(DragAndDrop.java:159)<o:p class=""></o:p></div>
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at java.lang.Thread.run(Thread.java:662)<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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<span style="" class="">Cheers,<span class="Apple-converted-space"> </span><o:p class=""></o:p></span></div>
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<span style="" class=""><o:p class=""> </o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif;" class="">
<span style="" class="">Alexander Peter Pariani<o:p class=""></o:p></span></div>
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<span style="" class="">PhD student<o:p class=""></o:p></span></div>
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<span style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">_______________________________________________</span><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<span style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">ome-users
mailing list</span><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<a href="mailto:ome-users@lists.openmicroscopy.org.uk" style="color: rgb(149, 79, 114); text-decoration: underline; font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;" class="">ome-users@lists.openmicroscopy.org.uk</a><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users" style="color: rgb(149, 79, 114); text-decoration: underline; font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;" class="">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a></div>
</blockquote>
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<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
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