<html>
<head>
<meta http-equiv="content-type" content="text/html; charset=utf-8">
</head>
<body text="#000000" bgcolor="#FFFFFF">
<p>Dear Roger,</p>
<p>I hope that you can read this (I'm not sure how this mailing list
is organized).</p>
<p>Thank you so much for your investigation. Following the
instruction, I've increased the memory up to 2500m (see below),
but still I cannot open the same file with the same error message.
I've reinstalled bioformats toolbox 5.7.1. Any thoughts?</p>
<p>Best,</p>
<p>Kouichi<br>
</p>
<p><br>
</p>
<p>>> java.lang.Runtime.getRuntime.maxMemory<br>
ans =<br>
2.4033e+09</p>
<p><br>
</p>
<p>MATLAB R2017b, <br>
</p>
<p>Windows 7,</p>
<p>Bioformats toolbox 5.7.1</p>
<p><br>
</p>
<p><br>
</p>
<div class="diagnosticMessage-messagePart"> .Error using
bfGetPlane (line 78)<br>
Java exception occurred:<br>
java.lang.RuntimeException:
jj2000.j2k.fileformat.reader.FileFormatReader.<init>(Ljj2000/j2k/io/RandomAccessIO;Lcom/sun/media/imageioimpl/plugins/jpeg2000/J2KMetadata;)V<br>
<br>
at
com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState.initializeRead(J2KReadState.java:729)<br>
<br>
at
com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState.<init>(J2KReadState.java:241)<br>
<br>
at
com.sun.media.imageioimpl.plugins.jpeg2000.J2KImageReader.readRaster(J2KImageReader.java:551)<br>
<br>
at
ome.codecs.services.JAIIIOServiceImpl.readRaster(JAIIIOServiceImpl.java:177)<br>
<br>
at ome.codecs.JPEG2000Codec.decompress(JPEG2000Codec.java:296)<br>
<br>
at ome.codecs.JPEG2000Codec.decompress(JPEG2000Codec.java:267)<br>
<br>
at
loci.formats.codec.WrappedCodec.decompress(WrappedCodec.java:132)<br>
<br>
at
loci.formats.codec.JPEG2000Codec.decompress(JPEG2000Codec.java:63)<br>
<br>
at
loci.formats.in.JPEG2000Reader.openBytes(JPEG2000Reader.java:182)<br>
<br>
at loci.formats.ImageReader.openBytes(ImageReader.java:457)<br>
<br>
at
loci.formats.ChannelFiller.openBytes(ChannelFiller.java:156)<br>
<br>
at
loci.formats.ChannelFiller.openBytes(ChannelFiller.java:148)<br>
<br>
at
loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:198)<br>
<br>
at
loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:159)<br>
<br>
Caused by: java.lang.NoSuchMethodError:<br>
jj2000.j2k.fileformat.reader.FileFormatReader.<init>(Ljj2000/j2k/io/RandomAccessIO;Lcom/sun/media/imageioimpl/plugins/jpeg2000/J2KMetadata;)V<br>
<br>
at
com.sun.media.imageioimpl.plugins.jpeg2000.J2KReadState.initializeRead(J2KReadState.java:450)<br>
<br>
... 13 more<br>
<br>
Error in bfopen (line 150)<br>
arr = bfGetPlane(r, i, varargin{:}); <br>
78 plane = r.openBytes(...</div>
<p><br>
</p>
<p><br>
</p>
<p><br>
</p>
<p><br>
</p>
<p><br>
</p>
<p><br>
</p>
<pre class="moz-signature" cols="72">--
Kouichi C. Nakamura, PhD
Senior Postdoctoral Neuroscientist
MRC Brain Network Dynamics Unit
University of Oxford
Mansfield Road, Oxford OX1 3TH, United Kingdom
+44-1865-271582 (office)
<a class="moz-txt-link-freetext" href="http://www.mrcbndu.ox.ac.uk/people/dr-kouichi-c-nakamura">http://www.mrcbndu.ox.ac.uk/people/dr-kouichi-c-nakamura</a>
<a class="moz-txt-link-abbreviated" href="mailto:kouichi.c.nakamura@gmail.com">kouichi.c.nakamura@gmail.com</a>
<a class="moz-txt-link-abbreviated" href="mailto:kouichi.nakamura@pharm.ox.ac.uk">kouichi.nakamura@pharm.ox.ac.uk</a></pre>
</body>
</html>