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<p class="MsoNormal"><span style="font-size:11.0pt;color:#1F497D">I found this on the SVI webpage:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;color:#1F497D">Huygens Core, part of the Huygens Software, is a full compute engine intended to run image processing and deconvolution jobs on large 64 bit multiprocessor servers. It has no specific graphical
interface by itself. Huygens Remote Manager (HRM) is an open source web task manager for servers that can acts as an interface to Huygens Core to handle multi-user batch processing.
<b>HRM has an optimized interface connection to the open source OMERO server</b>. Click here to try out HRM/Huygens Core on our online demo server.
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;color:#1F497D"><a href="https://svi.nl/Huygens-Core"><span style="color:#1F497D;text-decoration:none">https://svi.nl/Huygens-Core</span></a><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN" style="font-size:9.0pt;font-family:"Open Sans";color:#222222"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;color:#1F497D">Has anyone tried this?<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN" style="font-size:9.0pt;font-family:"Open Sans";color:#222222"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;color:#1F497D">Best wishes<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;color:#1F497D"><br>
Andreas<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="color:black;mso-fareast-language:EN-GB">----------------------------------------------------<o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black;mso-fareast-language:EN-GB">Dr Andreas Bruckbauer<o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black;mso-fareast-language:EN-GB">FILM facility manager<o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black;mso-fareast-language:EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black;mso-fareast-language:EN-GB">Sir Alexander Fleming Building<br>
South Kensington Campus<br>
Imperial College London<br>
Exhibition Road<br>
London, SW7 2AZ<o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black;mso-fareast-language:EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black;mso-fareast-language:EN-GB">SAF 4th floor, open space desk 401<o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black;mso-fareast-language:EN-GB">+44 (0)20 7594 2023<o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black;mso-fareast-language:EN-GB"><a href="mailto:a.bruckbauer@imperial.ac.uk">a.bruckbauer@imperial.ac.uk</a><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black;mso-fareast-language:EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black;mso-fareast-language:EN-GB"><a href="http://www.imperial.ac.uk/medicine/facility-for-imaging-by-light-microscopy/">http://www.imperial.ac.uk/medicine/facility-for-imaging-by-light-microscopy/</a><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span style="font-size:11.0pt;color:black;mso-fareast-language:EN-GB">----------------------------------------------------<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:EN-GB">From:</span></b><span lang="EN-US" style="font-size:11.0pt;mso-fareast-language:EN-GB"> ome-users [mailto:ome-users-bounces@lists.openmicroscopy.org.uk]
<b>On Behalf Of </b>Glyn Nelson<br>
<b>Sent:</b> 25 September 2017 12:16<br>
<b>To:</b> ome-users@lists.openmicroscopy.org.uk<br>
<b>Subject:</b> Re: [ome-users] hdf5 format huygens<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Hi Vita, and other Huygens users,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Regarding your question:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">-<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">I would like to ask when BioFormats plan to start supporting h5 file which are generated by the Huygens software? We just recently had a course with 16 participants, where they learned how to use Huygens and
after that the participants wanted to open their images in Fiji/ImageJ, but unfortunately Fiji/ImageJ does not support h5 format. I was told by SVI, that I can contact you about this issue.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">-<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">As a user of Huygens and ImageJ/ Fiji, I get round the problem by saving out as ics2 file format from Huygens. This file format maintains all the metadata and image bitdepth, and is supported in bioformats.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">A better workaround which would be less work for everyone would be if Huygens allowed you to choose your default save file format: it always defaults to h5. I have requested SVI for this as a feature, but
it hasn’t happened so far.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Best wishes,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Glyn<o:p></o:p></span></p>
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