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<p class="MsoNormal">Hello.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I think I found a bug in Bio-Formats.<o:p></o:p></p>
<p class="MsoNormal">The issue is that I’m not able to load time stamps from my Leica .lif files. I ran into the problem while using Matlab toolbox, but I checked whether I could get the time stamps in Fiji and I also couldn’t get them there.<o:p></o:p></p>
<p class="MsoNormal">One thing to note is that my data was acquired using “Live Data Mode” which allows you to acquire different ‘jobs’ in the Leica software.
<o:p></o:p></p>
<p class="MsoNormal">I can see the timestamps in the LASX software (see screenshot) so they’re saved in the lif file.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I have uploaded my file on the QA system. (BugReport_MM.lif).<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Code that reproduces problem in Matlab:<o:p></o:p></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">Reader = bfGetReader(</span><span style="font-size:10.0pt;font-family:"Courier New";color:#A020F0">'BugReport_MM.lif'</span><span style="font-size:10.0pt;font-family:"Courier New";color:black">);</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">Reader.setSeries(0);</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span style="font-size:10.0pt;font-family:"Courier New";color:black">omeMeta = Reader.getMetadataStore();
</span><span style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span lang="NL" style="font-size:10.0pt;font-family:"Courier New";color:black">deltaT = omeMeta.getPlaneDeltaT(0,0); %deltaT is empty</span><span lang="NL" style="font-size:12.0pt;font-family:"Courier New""><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="NL"><o:p> </o:p></span></p>
<p class="MsoNormal">Code that reproduces problem in Fiji<o:p></o:p></p>
<p class="MsoNormal">run("Bio-Formats Macro Extensions");<o:p></o:p></p>
<p class="MsoNormal">Ext.setId("Y:\\Marjolein\\OME bug report\\BugReport_MM.lif")<o:p></o:p></p>
<p class="MsoNormal"><span lang="NL">Ext.getPlaneTimingDeltaT(deltaT, 1)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="NL">print(deltaT); // deltaT is NaN<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="NL"><o:p> </o:p></span></p>
<p class="MsoNormal">System info:<o:p></o:p></p>
<p class="MsoNormal">Windows 8.1 Enterprise 64-bit<o:p></o:p></p>
<p class="MsoNormal">Java 1.8.0_111<o:p></o:p></p>
<p class="MsoNormal">BioFormats 5.5.3<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Thank you,<o:p></o:p></p>
<p class="MsoNormal">Marjolein<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><b><span style="color:#833C0B">Marjolein Meddens PhD</span></b><span style="font-size:9.0pt"> | Postdoc</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:3.0pt"> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:9.0pt">Department of Physics and Astronomy</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:9.0pt">Department of Pathology</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:9.0pt">University of New Mexico</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:9.0pt">Albuquerque, USA</span><span lang="NL"><o:p></o:p></span></p>
<p class="MsoNormal"> <span lang="NL"><o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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