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<p style="margin-top:0cm;background:white"><span style="font-size:10.5pt;font-family:"Helvetica",sans-serif;color:#222222">Hey everyone,<o:p></o:p></span></p>
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<span style="font-size:10.5pt;font-family:"Helvetica",sans-serif;color:#222222">I have some problems with opening Zeiss ZVI files with the latest Fiji version on Windows 10 64bit. (ImageJ 2.0.0-rc61/1.51n, Java 1.8.0_101 [64bit], 6004MB memory, bio-formats_plugins-5.5.2).
I already posted the issue on the ImageJ forum (<a href="http://forum.imagej.net/t/memory-problem-opening-zeiss-zvi-file/5813">http://forum.imagej.net/t/memory-problem-opening-zeiss-zvi-file/5813</a>) and they suggested to also file a bug report here. I uploaded
a sample file on <a href="http://qa.openmicroscopy.org.uk/qa/upload/">http://qa.openmicroscopy.org.uk/qa/upload/</a> (File ID
</span><span style="font-size:10.0pt;font-family:"Arial",sans-serif;color:#555555;background:white">17769</span><span style="font-size:10.5pt;font-family:"Helvetica",sans-serif;color:#222222">). The ZVI file contains 200 tiles with 2 channels from scanning
with a Zeiss AxioImager M2m.<br>
When I open the ZVI file (not very big around 300MB), Fiji starts opening the Bio-formats options. I open the file with "open all series" and "concatenate series when compatible" activated. In the status bar he says import preparations complete and afterwards
I see the memory usage increase in the task manager up to 6000MB. The same in ImageJ and eventually he displays the log message:
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Times New Roman",serif">>>>>>>>>>>>>>>>>>>>>>>>>>>><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Times New Roman",serif"><Out of memory><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Times New Roman",serif"><All available memory (5970MB) has been><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Times New Roman",serif"><used. To make more available, use the><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Times New Roman",serif"><Edit>Options>Memory & Threads command.><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Times New Roman",serif">>>>>>>>>>>>>>>>>>>>>>>>>>>><o:p> </o:p></span></p>
<p style="background:white"><span style="font-size:10.5pt;font-family:"Helvetica",sans-serif;color:#222222">This works without a problem using ImageJ 2.0.0-rc56/1.51h, Java 1.8.0_66 [64bit], bio-formats_plugins-5.3.3. Here the memory usage in ImageJ is just
300MB.<o:p></o:p></span></p>
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<span style="font-size:10.5pt;font-family:"Helvetica",sans-serif;color:#222222">Has anybody an idea what the problem is?<o:p></o:p></span></p>
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<span lang="FR-CH" style="font-size:10.5pt;font-family:"Helvetica",sans-serif;color:#222222">Thanks<br>
Benjamin</span><span style="font-family:"Calibri",sans-serif"><o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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