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<p>Hi,</p>
<p>I have an update to this: while there was no error during upload,
I received an error during processing "failed to read pixels" for
one of the images (<a
href="https://demo.openmicroscopy.org/webclient/?show=image-576">example
image ID 576</a> , see attached error log)<br>
</p>
thanks for your help and cheers,<br>
Kai<br>
<br>
<br>
<br>
<div class="moz-cite-prefix">On 06/16/2017 11:45 AM, Kai Schleicher
wrote:<br>
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<blockquote type="cite"
cite="mid:7b066162-389a-75b8-d633-d077dfa174f8@unibas.ch">
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<p>Hi,</p>
<p>first, even though its already a bit in the past: Thanks for
the great OME meeting! I was happy to meet everyone and see all
the new and amazing things to come :)<br>
</p>
<p>second, thanks for the freshly installed 5.3.2 OMERO demo
server! For testing I have uploaded some jpegXR compressed
multi-sceen BF and FL images of our AxioScan slidescanner
(*czi), which uploaded with no issue (<a moz-do-not-send="true"
href="https://demo.openmicroscopy.org/webclient/?show=dataset-17">dataset
ID 17</a>, <a moz-do-not-send="true"
href="https://demo.openmicroscopy.org/webclient/?show=image-576">example
image ID 576</a> ).</p>
<p>I noticed however that the OMERO sever spends some time
calculating a pyramid for my images. <br>
</p>
<p>Since these images already contained pyramids that where
calculated by Zen after acquisition, do you think it would be
possible to skip pyramid creation on the OMERO server side and
use the ones provided in the czi instead? <br>
</p>
<p>While I could confirm that FIJI/Bio-formats recognises the
pyramids in those images, I don't really know if they are on the
same zoom-level that OMERO expects/ likes to use.</p>
<p>Let me know if you wish to have the example images uploaded
somewhere else other than your demo server :)</p>
<p>Thanks and cheers,<br>
Kai<br>
</p>
<pre class="moz-signature" cols="72">--
>>Please note my NEW PHONE NUMBERS: +41 61 207 57 31 (direct) +41 61 207 22 50 (central)<<
Kai Schleicher, PhD | Research Associate in Advanced Light Microscopy | Biozentrum, University of Basel | Klingelbergstrasse 50/70 | CH-4056 Basel |
Phone: +41 61 207 57 31 (direct) +41 61 207 22 50 (central) | <a class="moz-txt-link-abbreviated" href="mailto:kai.schleicher@unibas.ch" moz-do-not-send="true">kai.schleicher@unibas.ch</a> | <a class="moz-txt-link-abbreviated" href="http://www.biozentrum.unibas.ch" moz-do-not-send="true">www.biozentrum.unibas.ch</a> | <a class="moz-txt-link-abbreviated" href="http://www.microscopynetwork.unibas.ch" moz-do-not-send="true">www.microscopynetwork.unibas.ch</a></pre>
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