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Hi Georg,
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<div class="">Thank you for reporting this problem and for providing sample files. I was able to test and reproduce the same issue as you reported with the latest Bio-Formats release.</div>
<div class="">From debugging the issue it appears to be caused as the number of bytes read per plane is greater than the Bio-Formats reader expects. The reader tries to adjust the image width to account for this. In this scenario it has adjusted it incorrectly,
however we have other sample files in our repository which require the adjustment to be made.</div>
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<div class="">If we can better understand these two scenarios for .cxd files then we should be able to make a fix available. </div>
<div class="">Are you aware if this issue is only present in files when Binning is set or have you noticed it present in other files also?</div>
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<div class="">With Thanks,</div>
<div class="">David Gault</div>
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<div class="">On 25 Apr 2017, at 02:23, Georg Vogler <<a href="mailto:gvogler@sbpdiscovery.org" class="">gvogler@sbpdiscovery.org</a>> wrote:</div>
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<span style="font-size: 11pt; font-family: Arial;" class="">Hi!<o:p class=""></o:p></span></div>
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<span style="font-size: 11pt; font-family: Arial;" class=""> </span></div>
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<span style="font-size: 11pt; font-family: Arial;" class="">I have trouble opening movie files created with HCImage using current installations of FIJI or Image with bioformats importer (fully updated).<o:p class=""></o:p></span></div>
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<span style="font-size: 11pt; font-family: Arial;" class=""> </span></div>
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<span style="font-size: 11pt; font-family: Arial;" class="">While regular cxd files import just fine, it seems that files that were recorded with 4x binning don’t open properly but show a distorted image.<o:p class=""></o:p></span></div>
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<span style="font-size: 11pt; font-family: Arial;" class=""> </span></div>
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<span style="font-size: 11pt; font-family: Arial;" class="">Original cxd file:<span class="Apple-converted-space"> </span><a href="https://www.dropbox.com/s/wppbc8w0xumsbfx/tdGFP%20adult%20heart%20x%20Hand42-Gal4%20%232.cxd?dl=0" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">https://www.dropbox.com/s/wppbc8w0xumsbfx/tdGFP%20adult%20heart%20x%20Hand42-Gal4%20%232.cxd?dl=0</a><o:p class=""></o:p></span></div>
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<span style="font-size: 10.5pt; font-family: 'Lucida Grande';" class=""> </span></div>
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<span style="font-size: 10.5pt; font-family: 'Lucida Grande';" class="">How it is displayed (on MacOS and Windows 7 64bit):<a href="https://www.dropbox.com/s/7d1egax8zmegpcz/Screen%20Shot%202017-04-24%20at%206.20.48%20PM.png?dl=0" style="color: rgb(149, 79, 114); text-decoration: underline;" class="">https://www.dropbox.com/s/7d1egax8zmegpcz/Screen%20Shot%202017-04-24%20at%206.20.48%20PM.png?dl=0</a><o:p class=""></o:p></span></div>
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<span style="font-size: 10.5pt; font-family: 'Lucida Grande';" class=""> </span></div>
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<span style="font-size: 10.5pt; font-family: 'Lucida Grande';" class=""> </span></div>
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<span style="font-size: 10.5pt; font-family: 'Lucida Grande';" class="">Can you see if this is fixable? I had seen this problem before but I’m not sure if it got resolved since then.<o:p class=""></o:p></span></div>
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<span style="font-size: 10.5pt; font-family: 'Lucida Grande';" class="">Thanks a lot,<o:p class=""></o:p></span></div>
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<span style="font-size: 10.5pt; font-family: 'Lucida Grande';" class=""><br class="">
Geo<o:p class=""></o:p></span></div>
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<span style="font-size: 10.5pt; font-family: 'Lucida Grande';" class=""> </span></div>
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<span style="font-size: 10.5pt; font-family: 'Helvetica Neue';" class="">Georg Vogler, Ph.D.<o:p class=""></o:p></span></div>
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