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Dear Jason,
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<div class="">Thank you for the useful references an pointers.</div>
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<div class="">Happy Holidays,</div>
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<div class="">Jaim<br class="">
<div class="">__<br class="">
Dr Jaime Prilusky<br class="">
R&D Bioinformatics and Data Management<br class="">
Life Sciences Core Facilities<br class="">
Weizmann Institute of Science<br class="">
76100 Rehovot - Israel<br class="">
<br class="">
mail: <a href="mailto:Jaime.Prilusky@weizmann.ac.il" class="">Jaime.Prilusky@weizmann.ac.il</a><br class="">
tel: 972-8-934-4959<br class="">
fax: 972-8-934-6006<br class="">
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<div class="">On 24 Dec 2016, at 11:09 AM, Jason Swedlow (Staff) <<a href="mailto:j.r.swedlow@dundee.ac.uk" class="">j.r.swedlow@dundee.ac.uk</a>> wrote:</div>
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<div style="font-family: Calibri, sans-serif; font-size: 14px;" class="">Hi Jaime-</div>
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<div style="font-family: Calibri, sans-serif; font-size: 14px;" class="">Not sure if this is helpful, but two examples of OMERO-based resources that are annotating cell images are:</div>
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<div style="font-family: Calibri, sans-serif; font-size: 14px;" class="">IDR: <a href="http://idr-demo.openmicroscopy.org/" class="">http://idr-demo.openmicroscopy.org</a>; <a href="http://biorxiv.org/content/early/2016/11/24/089359" class="">http://biorxiv.org/content/early/2016/11/24/089359</a>.
IDR uses CMPO for cell phenotype annotations: <a href="http://www.ebi.ac.uk/cmpo" class="">http://www.ebi.ac.uk/cmpo</a>/, but the phenotypes recorded there are more conceptual and might or might not be relevant to what you are looking for.</div>
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<div style="font-family: Calibri, sans-serif; font-size: 14px;" class="">SSBD: <a href="http://ssbd.qbic.riken.jp/" class="">
http://ssbd.qbic.riken.jp</a>; <a href="http://bioinformatics.oxfordjournals.org/content/32/22/3471.full" class="">
http://bioinformatics.oxfordjournals.org/content/32/22/3471.full</a>; and in particular, <a href="https://www.researchgate.net/publication/310753318_Development_of_an_Ontology_for_an_Integrated_Image_Analysis_Platform_to_enable_Global_Sharing_of_Microscopy_Imaging_Data" class="">https://www.researchgate.net/publication/310753318_Development_of_an_Ontology_for_an_Integrated_Image_Analysis_Platform_to_enable_Global_Sharing_of_Microscopy_Imaging_Data</a></div>
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<div class=""><font face="Calibri,sans-serif" class="">If you want to be more specific about the terms you are thinking about regarding “tracking data”, maybe that might help shake a few more trees.</font></div>
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<div class=""><font face="Calibri,sans-serif" class="">Cheers,</font></div>
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<div class=""><font face="Calibri,sans-serif" class="">Jason</font></div>
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<div style="font-family: Calibri, sans-serif; font-size: 14px;" class="">On 19/12/2016 07:44, "ome-users on behalf of Jaime Prilusky" <<a href="mailto:ome-users-bounces@lists.openmicroscopy.org.uk" class="">ome-users-bounces@lists.openmicroscopy.org.uk</a>
on behalf of <a href="mailto:jaime.prilusky@weizmann.ac.il" class="">jaime.prilusky@weizmann.ac.il</a>> wrote:</div>
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<div class="">We are collecting terms for CMEO, the Ontology of CMSO (Cell Migration Standardization Organization ,
<a href="https://cmso.science/" class="">https://cmso.science/</a>), and would appreciate your help by providing the tags collected by your OMERO server for tracking data to be used as example.</div>
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<div class="">We will acknowledge your contribution to the Ontology even when the terms themselves will remain anonymous.</div>
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<div class="">The documentation to extract the list of tags from OMERO is at <a href="https://www.openmicroscopy.org/site/support/omero5.2/users/cli/tag.html" class="">
https://www.openmicroscopy.org/site/support/omero5.2/users/cli/tag.html</a> </div>
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<div class="">Thank you in advance,</div>
<div class="">Regards,</div>
<div class="">__</div>
<div class="">Dr Jaime Prilusky</div>
<div class="">R&D Bioinformatics and Data Management</div>
<div class="">Life Sciences Core Facilities</div>
<div class="">Weizmann Institute of Science</div>
<div class="">76100 Rehovot - Israel</div>
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<div class="">mail: <a href="mailto:Jaime.Prilusky@weizmann.ac.il" class="">Jaime.Prilusky@weizmann.ac.il</a></div>
<div class="">tel: 972-8-934-4959</div>
<div class="">fax: 972-8-934-6006</div>
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