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Hi Dan et al,
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<div class="">quick follow-up on this thread after looking at the 4.9 GB file below.</div>
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<div class="">A similar issue with long time-lapse Deltavision filesets have been reported as of [1]. We are</div>
<div class="">investigating a fix for this bug [2] and hope to have it released in the upcoming version of</div>
<div class="">Bio-Formats.</div>
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<div class="">Best,</div>
<div class="">Sebastien</div>
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<div class="">[1] <a href="https://trac.openmicroscopy.org/ome/ticket/13261" class="">https://trac.openmicroscopy.org/ome/ticket/13261</a> </div>
<div class="">[2] <a href="https://github.com/openmicroscopy/bioformats/pull/2590" class="">https://github.com/openmicroscopy/bioformats/pull/2590</a> </div>
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<blockquote type="cite" class="">
<div class="">On 27 Sep 2016, at 15:33, Jason Swedlow (Staff) <<a href="mailto:j.r.swedlow@dundee.ac.uk" class="">j.r.swedlow@dundee.ac.uk</a>> wrote:</div>
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<div class="">Hi Dan-</div>
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<div class="">Thank for this. While we appreciate the diligent support you are providing to your customer, it would help us a lot if Deanna would upload the file herself using OME's resources at <a href="https://www.openmicroscopy.org/qa2/qa/upload/" class="">https://www.openmicroscopy.org/qa2/qa/upload/</a>.
That gets it into our issue tracking system, and gives us the means to follow-up, test our work, etc. In short, everything will work better and we’ll get all this resolved faster.</div>
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<div class="">Thanks!!</div>
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<div class="">Cheers,</div>
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<div class="">Jason</div>
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<span style="font-weight:bold" class="">From: </span>ome-users <<a href="mailto:ome-users-bounces@lists.openmicroscopy.org.uk" class="">ome-users-bounces@lists.openmicroscopy.org.uk</a>> on behalf of Daniel White <<a href="mailto:dan@chalkie.org.uk" class="">dan@chalkie.org.uk</a>><br class="">
<span style="font-weight:bold" class="">Reply-To: </span>OME Users <<a href="mailto:ome-users@lists.openmicroscopy.org.uk" class="">ome-users@lists.openmicroscopy.org.uk</a>><br class="">
<span style="font-weight:bold" class="">Date: </span>Tuesday, 27 September 2016 13:13<br class="">
<span style="font-weight:bold" class="">To: </span>OME Users <<a href="mailto:ome-users@lists.openmicroscopy.org.uk" class="">ome-users@lists.openmicroscopy.org.uk</a>><br class="">
<span style="font-weight:bold" class="">Subject: </span>[ome-users] Fwd: FW: EXT: Re: .dv large time series file open bug?<br class="">
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<div dir="ltr" class="">Hi Bio-formats folks
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<div class="">please see below the box link to a very large .dv file that apparently doesnt open in fiji. </div>
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<div class="">Best</div>
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<div class="">Dan</div>
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<div class="gmail_quote">@@@@@@@@@@@@@@@@@@@22<br class="">
It's too large to upload there, so I put it up on <a href="http://box.com/" rel="noreferrer" target="_blank" class="">
box.com</a>. Feel free to share the link with whoever needs it:<br class="">
<span class=""><br class="">
<a href="https://uitno.box.com/s/sba6jo3t2dbn21a4zxz2quruw1usllal" rel="noreferrer" target="_blank" class="">https://uitno.box.com/s/<wbr class="">sba6jo3t2dbn21a4zxz2quruw1usll<wbr class="">al</a><br class="">
______________________________<wbr class="">__________<br class="">
From: White, Daniel J (GE Healthcare) <<a href="mailto:daniel.J.white@ge.com" class="">daniel.J.white@ge.com</a>><br class="">
</span><span class="">Sent: Monday, September 26, 2016 6:19 PM<br class="">
To: Deanna Wolfson<br class="">
Subject: Fwd: EXT: Re: [ome-users] .dv large time series file open bug?<br class="">
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Hi Deanna,<br class="">
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The bioformats folks would like to see the big file.<br class="">
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Can you please upload it at<br class="">
<a href="https://www.openmicroscopy.org/qa2/qa/upload" rel="noreferrer" target="_blank" class="">https://www.openmicroscopy.<wbr class="">org/qa2/qa/upload</a><<a href="https://www.openmicroscopy.org/qa2/qa/upload/" rel="noreferrer" target="_blank" class="">https://www.<wbr class="">openmicroscopy.org/qa2/qa/<wbr class="">upload/</a>>/<br class="">
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Then they can test it.<br class="">
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Cheers<br class="">
<br class="">
Dan<br class="">
<br class="">
Best regards,<br class="">
<br class="">
Daniel J. White Ph.D.<br class="">
Applications Scientist - High/Super resolution microscopy Life Sciences - Cell Technologies GE Healthcare<br class="">
<br class="">
T: <a href="tel:%2B49%201522%201861813" value="+4915221861813" class="">+49 1522 1861813</a><tel:+49%201522%201861813>
<a href="mailto:daniel.j.white@ge.com" class="">daniel.j.white@ge.com</a><mailto:<a href="mailto:daniel.j.white@ge.com" class="">d<wbr class="">aniel.j.white@ge.com</a>><br class="">
</span><span class=""><a href="http://www.gelifesciences.com/" rel="noreferrer" target="_blank" class="">www.gelifesciences.com</a><<a href="http://www.gelifesciences.com/" rel="noreferrer" target="_blank" class="">http://<wbr class="">www.gelifesciences.com/</a>><br class="">
<br class="">
<br class="">
<br class="">
Begin forwarded message:<br class="">
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</span><span class="">From: Daniel White <<a href="mailto:dan@chalkie.org.uk" class="">dan@chalkie.org.uk</a><mailto:<a href="mailto:dan@chalkie.org.uk" class="">dan<wbr class="">@chalkie.org.uk</a>>><br class="">
</span><span class="">Date: 26. September 2016 um 18:17:19 MESZ<br class="">
To: Dan White <<a href="mailto:daniel.j.white@ge.com" class="">daniel.j.white@ge.com</a><mailto:<a href="mailto:daniel.j.white@ge.com" class=""><wbr class="">daniel.j.white@ge.com</a>>><br class="">
</span><span class="">Subject: EXT: Re: [ome-users] .dv large time series file open bug?<br class="">
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Fwd to Deanna<br class="">
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</span><span class="">On 26 Sep 2016 17:21, "Mark Carroll" <<a href="mailto:m.t.b.carroll@dundee.ac.uk" class="">m.t.b.carroll@dundee.ac.uk</a><<wbr class="">mailto:<a href="mailto:m.t.b.carroll@dundee.ac.uk" class="">m.t.b.carroll@dundee.<wbr class="">ac.uk</a>>>
wrote:<br class="">
Dear Dan,<br class="">
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So there is a sample file as described above uploaded to imageJ upload server, but i dont have rights to see that, so i cant test it myself.<br class="">
Maybe someone can share it with me somehow?<br class="">
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I am afraid that the OME team generally don't have access to ImageJ's servers either. If Deanna could upload instead to
<a href="https://www.openmicroscopy.org/qa2/qa/upload/" rel="noreferrer" target="_blank" class="">
https://www.openmicroscopy.<wbr class="">org/qa2/qa/upload/</a> then we are happy to try opening her file with Fiji and seeing what Bio-Formats is doing with it.<br class="">
If the file is too large then we can privately provide FTP upload credentials.<br class="">
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In the meantime, please do let us know if the GE folks say anything interesting about format issues with so many time points in case there is something that we need to feed back into the DeltaVision reader.<br class="">
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Cheers,<br class="">
<br class="">
Mark<br class="">
<br class="">
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<span style="font-size:10pt;" class="">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
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