<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
</head>
<body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif;">
<div>
<div>Hi,</div>
<div><br>
</div>
<div>Thank you for submitting your files and reporting your issue.</div>
<div>We were able to reproduce the same locally.</div>
<div><br>
</div>
<div>
<p style="margin: 0px; font-size: 12px; line-height: normal; font-family: Helvetica;">
A ticket has been filed on this regard,</p>
<p style="margin: 0px; font-size: 12px; line-height: normal; font-family: Helvetica;">
<a href="http://trac.openmicroscopy.org/ome/ticket/13291#ticket">http://trac.openmicroscopy.org/ome/ticket/13291#ticket</a></p>
<p style="margin: 0px; font-size: 12px; line-height: normal; font-family: Helvetica;">
<br>
</p>
<p style="margin: 0px; font-size: 12px; line-height: normal; font-family: Helvetica;">
And we look forward to tackling this issue at the earliest.</p>
<p style="margin: 0px; font-size: 12px; line-height: normal; font-family: Helvetica;">
Hope that helps.</p>
<p style="margin: 0px; font-size: 12px; line-height: normal; font-family: Helvetica;">
<br>
</p>
<p style="margin: 0px; font-size: 12px; line-height: normal; font-family: Helvetica;">
Best,</p>
<p style="margin: 0px; font-size: 12px; line-height: normal; font-family: Helvetica;">
Balaji</p>
</div>
<div>
<div><br>
</div>
<div>
<div style="color: rgb(40, 40, 40);"><span style="background-color: rgb(255, 255, 255);">__________________</span></div>
<div style="color: rgb(40, 40, 40);">
<p style="margin-top: 0px; margin-bottom: 0px;">Mr Balaji Ramalingam</p>
<p style="margin-top: 0px; margin-bottom: 0px;">Software Developer<br>
</p>
<p style="margin-top: 0px; margin-bottom: 0px;">OME Team</p>
<p style="margin-top: 0px; margin-bottom: 0px;">School of Life Sciences</p>
<p style="margin-top: 0px; margin-bottom: 0px;">University of Dundee</p>
</div>
</div>
</div>
</div>
<div><br>
</div>
<span id="OLK_SRC_BODY_SECTION">
<div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt">
<span style="font-weight:bold">From: </span>ome-users <<a href="mailto:ome-users-bounces@lists.openmicroscopy.org.uk">ome-users-bounces@lists.openmicroscopy.org.uk</a>> on behalf of "Bogovic, John" <<a href="mailto:bogovicj@janelia.hhmi.org">bogovicj@janelia.hhmi.org</a>><br>
<span style="font-weight:bold">Reply-To: </span>OME User Support List <<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Date: </span>Tuesday, 13 September 2016 at 19:09<br>
<span style="font-weight:bold">To: </span>"<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>" <<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Subject: </span>[ome-users] 4d Nifti missing 4th dimension<br>
</div>
<div><br>
</div>
<div>
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif;">
<div>Dear OME-devs,</div>
<div><br>
</div>
<div>I've come across an issue where some 4D Nifti files are loaded as 3D volumes.</div>
<div>I've uploaded an example: "volume4d.nii" to the QA system.</div>
<div>The result be 4d ( 506, 506, 43, 3 ) but opens in Fiji as a 3d ( 506, 506, 43 ) stack.</div>
<div><br>
</div>
<div>Some other perhaps helpful information:</div>
<div>It was produced by <a href="http://stnava.github.io/ANTs/">ANTS</a>, and can be read correctly by
<a href="https://mipav.cit.nih.gov/">MIPAV</a> and <a href="https://www.slicer.org/">
3dSlicer</a>.</div>
<div>As well, re-saving this file with MIPAV produces something that can be correctly read by Bioformats.</div>
<div><br>
</div>
<div>Thanks for your consideration,</div>
<div>John</div>
</div>
</div>
</span><br>
<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
</body>
</html>