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<p>Dear David,</p>
<p><br>
</p>
<p>I have the 5.2.0 version for Bio-Formats.</p>
<p><br>
</p>
<p>I will upload a sample now. </p>
<p><br>
</p>
<p>Best wishes,</p>
<p><br>
</p>
<p>Mubarik </p>
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<br>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" color="#000000" style="font-size:11pt"><b>From:</b> ome-users <ome-users-bounces@lists.openmicroscopy.org.uk> on behalf of David Gault (Staff) <d.gault@dundee.ac.uk><br>
<b>Sent:</b> 24 August 2016 10:06<br>
<b>To:</b> OME User Support List<br>
<b>Subject:</b> Re: [ome-users] Fiji error!</font>
<div> </div>
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<div>Hi Mubarik,
<div class=""><br class="">
</div>
<div class="">Could you tell us which version of Bio-Formats you are currently using? </div>
<div class="">You can find out by going to Help -> About Plugins -> Bio-Formats Plugins, the version will be listed beside ‘Release’.</div>
<div class=""><br class="">
</div>
<div class="">Also if it is possible would you be able to upload a sample file for testing to:</div>
<div class=""><a href="https://www.openmicroscopy.org/qa2/qa/upload/" class="" id="LPlnk116592">https://www.openmicroscopy.org/qa2/qa/upload/</a></div>
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<a id="LPUrlAnchor_14720300941530.5425667546223849" href="https://www.openmicroscopy.org/qa2/qa/upload/" target="_blank" style="text-decoration: none;">OMERO.qa - Open Microscopy Environment</a></div>
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www.openmicroscopy.org</div>
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Uploading sample images. OMERO uses Bio-Formats to help with importing files. Any files listed as a supported format should import into OMERO.</div>
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<div class=""><br class="">
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<div class="">With Thanks,</div>
<div class="">David Gault</div>
<div class=""><br class="">
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<div class=""><br class="">
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<blockquote type="cite" class="">
<div class="">On 23 Aug 2016, at 14:42, Burki, Mubarik <<a href="mailto:z.burki.12@ucl.ac.uk" class="">z.burki.12@ucl.ac.uk</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
<div id="divtagdefaultwrapper" class="" style="font-style:normal; font-variant:normal; font-weight:normal; letter-spacing:normal; line-height:normal; orphans:auto; text-align:start; text-indent:0px; text-transform:none; white-space:normal; widows:auto; word-spacing:0px; font-size:12pt; background-color:rgb(255,255,255); font-family:Calibri,Arial,Helvetica,sans-serif">
<div class="" style="margin-top:0px; margin-bottom:0px">Dear All,</div>
<div class="" style="margin-top:0px; margin-bottom:0px"><br class="">
</div>
<div class="" style="margin-top:0px; margin-bottom:0px">I am trying to open some files using Fiji that I have previously opened several times. However, I am now unable to open my lif files and <span class="" style="font-size:12pt">the following error comes
up:</span></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><br class="">
</div>
<div class="" style="margin-top:0px; margin-bottom:0px"><br class="">
</div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""> (Fiji Is Just) ImageJ 2.0.0-rc-49/1.51f; Java 1.8.0_66 [64-bit]; Mac OS X 10.9.5; 37MB of 1682MB (2%)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""> </b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class="">java.lang.IllegalArgumentException: order is unexpected length (4)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at loci.formats.DimensionSwapper.swapDimensions(DimensionSwapper.java:91)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at loci.plugins.in.ImportProcess.initializeDimOrder(ImportProcess.java:575)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at loci.plugins.in.ImportProcess.execute(ImportProcess.java:155)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at loci.plugins.in.Importer.showDialogs(Importer.java:140)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at loci.plugins.in.Importer.run(Importer.java:76)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at loci.plugins.LociImporter.run(LociImporter.java:78)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at ij.IJ.runUserPlugIn(IJ.java:217)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at ij.IJ.runPlugIn(IJ.java:181)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at ij.IJ.runPlugIn(IJ.java:170)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:499)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at HandleExtraFileTypes.run(HandleExtraFileTypes.java:72)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at ij.IJ.runUserPlugIn(IJ.java:217)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at ij.IJ.runPlugIn(IJ.java:181)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at ij.IJ.runPlugIn(IJ.java:170)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:515)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at ij.io.Opener.openImage(Opener.java:369)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at ij.io.Opener.openImage(Opener.java:243)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at ij.io.Opener.open(Opener.java:110)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at ij.io.Opener.openAndAddToRecent(Opener.java:292)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:192)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at ij.plugin.DragAndDrop.run(DragAndDrop.java:159)</b></div>
<div class="" style="margin-top:0px; margin-bottom:0px"><b class=""><span class="Apple-tab-span" style="white-space:pre"></span>at java.lang.Thread.run(Thread.java:745)</b></div>
<div class=""><br class="">
</div>
<div class="">I have tried updating FIJI and reinstalling it. Nothing seems to work. </div>
<div class=""><br class="">
</div>
<div class="">Please help!</div>
</div>
<span class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant:normal; font-weight:normal; letter-spacing:normal; line-height:normal; orphans:auto; text-align:start; text-indent:0px; text-transform:none; white-space:normal; widows:auto; word-spacing:0px; float:none; display:inline!important">_______________________________________________</span><br class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant:normal; font-weight:normal; letter-spacing:normal; line-height:normal; orphans:auto; text-align:start; text-indent:0px; text-transform:none; white-space:normal; widows:auto; word-spacing:0px">
<span class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant:normal; font-weight:normal; letter-spacing:normal; line-height:normal; orphans:auto; text-align:start; text-indent:0px; text-transform:none; white-space:normal; widows:auto; word-spacing:0px; float:none; display:inline!important">ome-users
mailing list</span><br class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant:normal; font-weight:normal; letter-spacing:normal; line-height:normal; orphans:auto; text-align:start; text-indent:0px; text-transform:none; white-space:normal; widows:auto; word-spacing:0px">
<a href="mailto:ome-users@lists.openmicroscopy.org.uk" class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant:normal; font-weight:normal; letter-spacing:normal; line-height:normal; orphans:auto; text-align:start; text-indent:0px; text-transform:none; white-space:normal; widows:auto; word-spacing:0px">ome-users@lists.openmicroscopy.org.uk</a><br class="" style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant:normal; font-weight:normal; letter-spacing:normal; line-height:normal; orphans:auto; text-align:start; text-indent:0px; text-transform:none; white-space:normal; widows:auto; word-spacing:0px">
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</blockquote>
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<br>
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