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Hi Niko and Kai,
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<div class="">I did some more investigation, and I think the main problem simply is that the metadata contains a plate definition although the file is not supposed to be a plate. There was some discussion going on here as well <a href="https://github.com/openmicroscopy/openmicroscopy/pull/4751" class="">https://github.com/openmicroscopy/openmicroscopy/pull/4751</a> (I
closed it again, because the PR would introduce other problems). Basically in Insight I have to rely on the metadata, I couldn't find a way to determine that the file is not plate other then checking the metadata. And if it's reported as plate, Insight ignores
the Project/Dataset setting, which is reasonable.</div>
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<div class="">Regards,</div>
<div class="">Dominik</div>
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<div class="">On 14 Jul 2016, at 13:17, Nikolaus Ehrenfeuchter <<a href="mailto:nikolaus.ehrenfeuchter@unibas.ch" class="">nikolaus.ehrenfeuchter@unibas.ch</a>> wrote:</div>
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<p dir="ltr" class="">Hi Dominik, </p>
<p dir="ltr" class="">Kai and me did some more investigation on this and figured out that the tf8 files will be placed in the correct location when using the command-line importer instead of insight. Does this give any additional hint?
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<p dir="ltr" class="">Cheers <br class="">
Niko </p>
<div class="gmail_extra"><br class="">
<div class="gmail_quote">Am 14.07.2016 2:11 nachm. schrieb "Dominik Lindner (Staff)" <<a href="mailto:d.lindner@dundee.ac.uk" class="">d.lindner@dundee.ac.uk</a>>:<br type="attribution" class="">
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<div class="">Hi Kai,<br class="">
<br class="">
sorry, that issue slipped a bit from my attention. Up to now I traced it back to the<br class="">
OMETiffReader. For these files it reports "High-Content Screening (HCS)", that causes<br class="">
the Insight importer to ignore the Dataset/Project settings. I'm not sure if that's an<br class="">
Importer problem, or more a Bioformats issue. I'll have to involve some Bioformats people<br class="">
into this. Sorry for the late reply.<br class="">
<br class="">
Cheers,<br class="">
Dominik<br class="">
<br class="">
<br class="">
> On 13 Jul 2016, at 13:45, Kai Schleicher <<a href="mailto:kai.schleicher@unibas.ch" class="">kai.schleicher@unibas.ch</a>> wrote:<br class="">
><br class="">
> Hi Dominik,<br class="">
><br class="">
> I was just wondering whether you'd already have some news regarding this issue.<br class="">
><br class="">
> I have just tested this problem again with OMERO 5.2.4, but it still persists.<br class="">
><br class="">
> As Niko wrote this is indeed the case for both "regular" TIFFs and tf8 files recorded with the LA software on the FEI MORE.<br class="">
><br class="">
> Thanks and cheers,<br class="">
> Kai<br class="">
<br class="">
<br class="">
The University of Dundee is a registered Scottish Charity, No: SC015096<br class="">
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