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That's true. I wonder if the command line importer ignores the HCS status, and why
<div class="">the file is imported as image at all and not as plate, because in the metadata there is</div>
<div class="">a plate definition. Anyway, will ask for some help from the Bioformats guys.</div>
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<div class="">Cheers,</div>
<div class="">Dominik</div>
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<div class="">On 14 Jul 2016, at 13:17, Nikolaus Ehrenfeuchter <<a href="mailto:nikolaus.ehrenfeuchter@unibas.ch" class="">nikolaus.ehrenfeuchter@unibas.ch</a>> wrote:</div>
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<p dir="ltr" class="">Hi Dominik, </p>
<p dir="ltr" class="">Kai and me did some more investigation on this and figured out that the tf8 files will be placed in the correct location when using the command-line importer instead of insight. Does this give any additional hint?
</p>
<p dir="ltr" class="">Cheers <br class="">
Niko </p>
<div class="gmail_extra"><br class="">
<div class="gmail_quote">Am 14.07.2016 2:11 nachm. schrieb "Dominik Lindner (Staff)" <<a href="mailto:d.lindner@dundee.ac.uk" class="">d.lindner@dundee.ac.uk</a>>:<br type="attribution" class="">
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<div class="">Hi Kai,<br class="">
<br class="">
sorry, that issue slipped a bit from my attention. Up to now I traced it back to the<br class="">
OMETiffReader. For these files it reports "High-Content Screening (HCS)", that causes<br class="">
the Insight importer to ignore the Dataset/Project settings. I'm not sure if that's an<br class="">
Importer problem, or more a Bioformats issue. I'll have to involve some Bioformats people<br class="">
into this. Sorry for the late reply.<br class="">
<br class="">
Cheers,<br class="">
Dominik<br class="">
<br class="">
<br class="">
> On 13 Jul 2016, at 13:45, Kai Schleicher <<a href="mailto:kai.schleicher@unibas.ch" class="">kai.schleicher@unibas.ch</a>> wrote:<br class="">
><br class="">
> Hi Dominik,<br class="">
><br class="">
> I was just wondering whether you'd already have some news regarding this issue.<br class="">
><br class="">
> I have just tested this problem again with OMERO 5.2.4, but it still persists.<br class="">
><br class="">
> As Niko wrote this is indeed the case for both "regular" TIFFs and tf8 files recorded with the LA software on the FEI MORE.<br class="">
><br class="">
> Thanks and cheers,<br class="">
> Kai<br class="">
<br class="">
<br class="">
The University of Dundee is a registered Scottish Charity, No: SC015096<br class="">
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