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Hi Oliver,
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<div class="">the Zeiss scene dimension should be supported by Bio-Formats and we certainly have</div>
<div class="">several representative CZI datasets including multiple scenes tested daily.</div>
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<div class="">Could you first of all confirm you are using Bio-Formats 5.1.10 in Fiji? Also, can you give us</div>
<div class="">more detail about the issue: is an error thrown by Bio-Formats when opening the file or is a</div>
<div class="">single position opened with wrong dimensions? Finally do you have a sample file that you could</div>
<div class="">upload to <a href="http://qa.openmicroscopy.org.uk/qa/upload/" class="">
http://qa.openmicroscopy.org.uk/qa/upload/</a> to reproduce the issue?</div>
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<div class="">Best,</div>
<div class="">Sebastien</div>
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<div class="">On 2 Jun 2016, at 10:25, Oliver Brookes <<a href="mailto:o.brookes@qmul.ac.uk" class="">o.brookes@qmul.ac.uk</a>> wrote:</div>
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<p class="">Hello, I've found that it's not possible to open multiple scene Zeiss images using bioformats in FIJI. Using the "positions" option on our Zeiss Elyra, it's possible to store multiple locations and automatically take pictures (very good for timelapse
video). The positional info is stored in the .czi format as a "scene" dimension - the dimensions of the file are listed as XYCZTSB. I can open czi images, stacks and movies that are taken at single positions (anything where the dimensions of the .czi file
are XYCZT). Is the extended .czi format not supported?</p>
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<p class="">Thanks,</p>
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<p class="">Oliver</p>
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