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<div>Hi,</div>
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<div>The link to the ticket is getting redirected to another ticket,</div>
<div>Here’s the corrected link,</div>
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<div style="color: rgb(40, 40, 40);"><span style="background-color: rgb(255, 255, 255);">__________________</span></div>
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<p style="margin-top: 0px; margin-bottom: 0px;">Mr Balaji Ramalingam</p>
<p style="margin-top: 0px; margin-bottom: 0px;">Software Developer<br>
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<p style="margin-top: 0px; margin-bottom: 0px;">OME Team</p>
<p style="margin-top: 0px; margin-bottom: 0px;">College of Life Sciences</p>
<p style="margin-top: 0px; margin-bottom: 0px;">University of Dundee</p>
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<span style="font-weight:bold">From: </span>Balaji Ramalingam <<a href="mailto:b.ramalingam@dundee.ac.uk">b.ramalingam@dundee.ac.uk</a>><br>
<span style="font-weight:bold">Date: </span>Tuesday, 22 March 2016 11:38<br>
<span style="font-weight:bold">To: </span>OME User Support List <<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Subject: </span>Re: [ome-users] Issue when reading czi lines scans<br>
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<div style="font-size: medium; font-family: Consolas;">Hi,</div>
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<div style="font-size: medium; font-family: Consolas;">Thank you reporting your issue.</div>
<div style="font-size: medium; font-family: Consolas;">We were able to reproduce the issue locally.</div>
<div style="font-size: medium; font-family: Consolas;">A ticket has been filed on this regard,</div>
<div style="font-size: medium; font-family: Consolas;"><a href="https://trac.openmicroscopy.org/ome/ticket/13179" style="color: purple;">https://trac.openmicroscopy.org/ome/ticket/13186</a></div>
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<div style="font-size: medium; font-family: Consolas;">And you have been added to the cc list.</div>
<div style="font-size: medium; font-family: Consolas;">Notifications will be sent to your email id, when there is a status change</div>
<div style="font-size: medium; font-family: Consolas;">on the ticket.</div>
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<div style="font-size: medium; font-family: Consolas;">Hope that helps.</div>
<div style="font-size: medium; font-family: Consolas;">Best,</div>
<div style="font-size: medium; font-family: Consolas;">Balaji</div>
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<div style="color: rgb(40, 40, 40);"><span style="background-color: rgb(255, 255, 255);">__________________</span></div>
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<p style="margin-top: 0px; margin-bottom: 0px;">Mr Balaji Ramalingam</p>
<p style="margin-top: 0px; margin-bottom: 0px;">Software Developer<br>
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<p style="margin-top: 0px; margin-bottom: 0px;">OME Team</p>
<p style="margin-top: 0px; margin-bottom: 0px;">College of Life Sciences</p>
<p style="margin-top: 0px; margin-bottom: 0px;">University of Dundee</p>
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<span style="font-weight:bold">From: </span>Ponti Aaron <<a href="mailto:aaron.ponti@bsse.ethz.ch">aaron.ponti@bsse.ethz.ch</a>><br>
<span style="font-weight:bold">Reply-To: </span>OME User Support List <<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Date: </span>Friday, 18 March 2016 16:25<br>
<span style="font-weight:bold">To: </span>"<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>" <<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Subject: </span>[ome-users] Issue when reading czi lines scans<br>
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<div>Hi,</div>
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<div>I attach two small line-scan z stacks Image1.czi and Image2.czi with following characteristics:</div>
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<div>Image1 (read properly):</div>
<div>Two channels (green and red)</div>
<div>Actual Dimensions: x y z =512 1 80</div>
<div>Pixel size: x z= 0.208um 0.5um</div>
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<div>Image2 (read incorrectly):</div>
<div>One channels (only red)</div>
<div>Actual Dimensions: x,y,z =512, 1, 240</div>
<div>Pixel size: x,z= 0.208um, 0.5um</div>
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<div>Image1 can be read properly by bio-formats 5.1.8 (resulting in a 512 x 1 x 80 dataset). Image2.czi is read incorrectly, resulting in a 512 x 1 x 1 dataset instead of 512 x 1 x 240 (the z information is lost). The only obvious difference between the two
files is the number of channels.</div>
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<div>Thanks for looking into this.</div>
<div>a2</div>
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<div style="font-family: Calibri, sans-serif; "><font class="Apple-style-span" color="rgb(0, 0, 0)"><font class="Apple-style-span" face="Calibri">Dr. Aaron Ponti</font></font></div>
<div style="font-family: Calibri, sans-serif; "><font class="Apple-style-span" color="rgb(0, 0, 0)"><font class="Apple-style-span" face="Calibri">Software and Data Management Engineer</font></font></div>
<div style="font-family: Calibri, sans-serif; "><font class="Apple-style-span" color="rgb(0, 0, 0)"><font class="Apple-style-span" face="Calibri">Image Analysis Specialist</font></font></div>
<div style="font-family: Calibri, sans-serif; "><font class="Apple-style-span" color="rgb(0, 0, 0)"><font class="Apple-style-span" face="Calibri">Single Cell Unit</font></font></div>
<div style="font-family: Calibri, sans-serif; "><font class="Apple-style-span" color="rgb(0, 0, 0)"><font class="Apple-style-span" face="Calibri">Department of Biosystems Science and Engineering (D-BSSE)</font></font></div>
<div style="font-family: Calibri, sans-serif; "><span class="Apple-style-span" style="font-family: Calibri;">ETH Zürich<br>
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<div style="font-family: Calibri, sans-serif; "><a href="mailto:aaron.ponti@bsse.ethz.ch">aaron.ponti@bsse.ethz.ch</a></div>
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<div><font class="Apple-style-span" color="rgb(0, 0, 0)"><font class="Apple-style-span" face="Calibri"><span class="Apple-style-span" style="font-size: 14px; ">+41 </span></font></font>61 387 33 74</div>
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