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<p class="MsoNormal">.czi files from the Zeiss 880 will not open. This includes both raw and processed data.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I was using a daily build version of LOCI BioFormats plugins from two weeks ago and just upgraded to daily build.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Please let me know if you’d like me to upload a dataset. We have examples from two different Ziess 880s, one here and one from a neighboring institution.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Thank you!!<o:p></o:p></p>
<p class="MsoNormal">-Michael<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Example error:<o:p></o:p></p>
<p class="MsoNormal">ImageJ 1.50g18; Java 1.6.0_20 [64-bit]; Windows 7 6.1; 23MB of 12000MB (<1%)<o:p></o:p></p>
<p class="MsoNormal"><o:p></o:p></p>
<p class="MsoNormal">java.lang.NumberFormatException: null<o:p></o:p></p>
<p class="MsoNormal"> at java.lang.Integer.parseInt(Integer.java:417)<o:p></o:p></p>
<p class="MsoNormal"> at java.lang.Integer.parseInt(Integer.java:499)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.in.ZeissCZIReader.translateExperiment(ZeissCZIReader.java:2151)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.in.ZeissCZIReader.translateMetadata(ZeissCZIReader.java:1214)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:699)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.FormatReader.setId(FormatReader.java:1317)<o:p></o:p></p>
<p class="MsoNormal"> at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:494)<o:p></o:p></p>
<p class="MsoNormal"> at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)<o:p></o:p></p>
<p class="MsoNormal"> at loci.plugins.in.Importer.showDialogs(Importer.java:141)<o:p></o:p></p>
<p class="MsoNormal"> at loci.plugins.in.Importer.run(Importer.java:79)<o:p></o:p></p>
<p class="MsoNormal"> at loci.plugins.LociImporter.run(LociImporter.java:81)<o:p></o:p></p>
<p class="MsoNormal"> at ij.IJ.runUserPlugIn(IJ.java:212)<o:p></o:p></p>
<p class="MsoNormal"> at ij.IJ.runPlugIn(IJ.java:176)<o:p></o:p></p>
<p class="MsoNormal"> at ij.IJ.runPlugIn(IJ.java:165)<o:p></o:p></p>
<p class="MsoNormal"> at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:258)<o:p></o:p></p>
<p class="MsoNormal"> at HandleExtraFileTypes.run(HandleExtraFileTypes.java:37)<o:p></o:p></p>
<p class="MsoNormal"> at ij.IJ.runUserPlugIn(IJ.java:212)<o:p></o:p></p>
<p class="MsoNormal"> at ij.IJ.runPlugIn(IJ.java:176)<o:p></o:p></p>
<p class="MsoNormal"> at ij.IJ.runPlugIn(IJ.java:165)<o:p></o:p></p>
<p class="MsoNormal"> at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:503)<o:p></o:p></p>
<p class="MsoNormal"> at ij.io.Opener.openImage(Opener.java:369)<o:p></o:p></p>
<p class="MsoNormal"> at ij.io.Opener.openImage(Opener.java:243)<o:p></o:p></p>
<p class="MsoNormal"> at ij.io.Opener.open(Opener.java:110)<o:p></o:p></p>
<p class="MsoNormal"> at ij.io.Opener.openAndAddToRecent(Opener.java:292)<o:p></o:p></p>
<p class="MsoNormal"> at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:186)<o:p></o:p></p>
<p class="MsoNormal"> at ij.plugin.DragAndDrop.run(DragAndDrop.java:153)<o:p></o:p></p>
<p class="MsoNormal"> at java.lang.Thread.run(Thread.java:619)<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt">=========================================================================<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt">Michael Cammer, Microscopy Core & Skirball Institute, NYU Langone Medical Center<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt"> Cell: 914-309-3270 **
</span><b><span style="font-size:10.0pt;font-family:"Adobe Fan Heiti Std B","sans-serif"">Office: Skirball 2<sup>nd</sup> Floor main office, back right **</span></b><i><span style="font-size:10.0pt"><o:p></o:p></span></i></p>
<p class="MsoNormal"><span style="font-size:10.0pt"> <a href="http://ocs.med.nyu.edu/microscopy">
<span style="color:blue">http://ocs.med.nyu.edu/microscopy</span></a> & <a href="http://microscopynotes.com/">
<span style="color:blue">http://microscopynotes.com/</span></a><o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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