<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Paul,<div class=""><br class=""></div><div class=""> Thanks for the update. I’ve added your comment to the PR at <a href="https://github.com/openmicroscopy/openmicroscopy/pull/4412" class="">https://github.com/openmicroscopy/openmicroscopy/pull/4412</a> </div><div class="">and the alpha option will be added before merging.</div><div class=""><br class=""></div><div class=""> Regards,</div><div class=""><br class=""></div><div class=""> Will.</div><div class=""><br class=""></div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On 18 Jan 2016, at 09:25, Paul Kibet Korir <<a href="mailto:pkorir@ebi.ac.uk" class="">pkorir@ebi.ac.uk</a>> wrote:</div><br class="Apple-interchange-newline"><div class="">
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Thanks very much Will. One step in the right direction.<br class="">
<br class="">
My particular use-case required that the colours set on ROIs include
the alpha-channel (which I created) so as not to completely hide the
segment begin the ROI. You might also want to include that in
rgbToRGBInt().<br class="">
<br class="">
Kind regards,<br class="">
<br class="">
Paul<br class="">
<br class="">
<div class="moz-cite-prefix">On 15/01/2016 11:06, William Moore
wrote:<br class="">
</div>
<blockquote cite="mid:278D9C2C-9797-4E79-9889-860E5E47C3DA@lifesci.dundee.ac.uk" type="cite" class="">
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Hi Paul,
<div class=""><br class="">
</div>
<div class=""> I have just opened a PR to improve our python ROI
examples, adding a Polygon example</div>
<div class="">and setting the strokeWidth, strokeColor and
fillColor. </div>
<div class=""><br class="">
</div>
<div class="">See <a moz-do-not-send="true" href="https://github.com/openmicroscopy/openmicroscopy/pull/4412" class="">https://github.com/openmicroscopy/openmicroscopy/pull/4412</a></div>
<div class=""><br class="">
</div>
<div class="">The updated ROIs.py file can be viewed at</div>
<div class=""><a moz-do-not-send="true" href="https://github.com/will-moore/openmicroscopy/blob/polygon_python_training_example/examples/Training/python/ROIs.py" class="">https://github.com/will-moore/openmicroscopy/blob/polygon_python_training_example/examples/Training/python/ROIs.py</a></div>
<div class=""><br class="">
</div>
<div class="">Some changes might be made during the PR review, but
hopefully that example is enough</div>
<div class="">to help you now?</div>
<div class=""><br class="">
</div>
<div class=""> Regards,</div>
<div class=""><br class="">
</div>
<div class=""> Will.</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
<div class="">
<blockquote type="cite" class="">
<div class="">On 14 Jan 2016, at 15:37, Paul Kibet Korir
<<a moz-do-not-send="true" href="mailto:pkorir@ebi.ac.uk" class="">pkorir@ebi.ac.uk</a>>
wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
<meta content="text/html; charset=windows-1252" http-equiv="Content-Type" class="">
<div bgcolor="#FFFFFF" text="#000000" class=""> Thanks. I
was actually interested in formating arguments for
Python (not Java).<br class="">
<br class="">
P<br class="">
<br class="">
<div class="moz-cite-prefix">On 14/01/2016 14:04, Mark
Carroll wrote:<br class="">
</div>
<blockquote cite="mid:5697AB00.30103@dundee.ac.uk" type="cite" class="">On 01/14/2016 01:38 PM, Paul
Kibet Korir wrote: <br class="">
<br class="">
<blockquote type="cite" class="">I'm having a
difficult time making sense of OMERO model objects <br class="">
described here <br class="">
<a moz-do-not-send="true" class="moz-txt-link-rfc2396E" href="https://www.openmicroscopy.org/site/support/omero5.2/developers/Model/EveryObject.html"><https://www.openmicroscopy.org/site/support/omero5.2/developers/Model/EveryObject.html></a>.
<br class="">
There seems to be no explicit definition of the
argument formats. <br class="">
<br class="">
I'm presently working with omero.model.PolygonI()
objects for which I <br class="">
need to set a number of attributes e.g. fillColor,
strokeColor etc. The <br class="">
documentation specifies base types (e.g. int,
string, bool) for the <br class="">
arguments but no accompanying structure. <br class="">
</blockquote>
<br class="">
Indeed: I am afraid that page does not document value
formats. It was <br class="">
generated by introspecting into the Hibernate (ORM)
model to investigate <br class="">
which mapped model objects refer to each other via
which properties; it <br class="">
doesn't contain anything that Hibernate doesn't know.
That page is most <br class="">
useful for figuring out how to write the JOINs in HQL
to get from what <br class="">
one has to what one wants. <br class="">
<br class="">
(snip) <br class="">
<blockquote type="cite" class="">Is there any
documentation on model arguments that I can refer
to? If <br class="">
not is there any plan to include this because client
programming is nigh <br class="">
impossible without it. <br class="">
</blockquote>
<br class="">
The most useful source is <br class="">
<a moz-do-not-send="true" class="moz-txt-link-freetext" href="http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2015-01/ome.html">http://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2015-01/ome.html</a>
<br class="">
-- click on "Polygon", far down on the left. That
tells you the format <br class="">
for the "points" property and links you back to
"Shape" for the others, <br class="">
for instance describing that the stroke color is a
signed 32-bit RGBA value. <br class="">
<br class="">
To generate examples, one can create the data
interactively (e.g., draw <br class="">
ROIs in Insight) then query them via HQL. For
instance, doing the <br class="">
described conversion, a -993737532 integer that I just
queried from <br class="">
OMERO is #C4C4C4C4 as a color and indeed in Insight's
code I see, <br class="">
<br class="">
DEFAULT_STROKE_COLOUR = new Color(196, 196, 196,
196); <br class="">
<br class="">
If you have trouble with any specific properties we'd
be happy to take a <br class="">
look to see if we can make any sense of them, as it
may have been some <br class="">
time since anybody read the OME-XML schema
documentation carefully for <br class="">
the properties you need. The web client code has to
deal with some of <br class="">
these formats "manually" as well. <br class="">
<br class="">
Cheers, <br class="">
<br class="">
Mark <br class="">
<br class="">
The University of Dundee is a registered Scottish
Charity, No: SC015096 <br class="">
_______________________________________________ <br class="">
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<br class="">
</blockquote>
<br class="">
<div class="moz-signature">-- <br class="">
With kind regards,<br class="">
<br class="">
<strong class="">Paul K Korir, PhD</strong><br class="">
<i class="">Scientific Programmer</i><br class="">
EMBL-EBI<br class="">
Main Building, A2-35,<br class="">
WTGC, Hinxton, Cambridge CB10 1SD<br class="">
P: +44 1223 49 44 22<br class="">
F: +44 1223 49 44 68</div>
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</blockquote>
<br class="">
<div class="moz-signature">-- <br class="">
With kind regards,<br class="">
<br class="">
<strong class="">Paul K Korir, PhD</strong><br class="">
<i class="">Scientific Programmer</i><br class="">
EMBL-EBI<br class="">
Main Building, A2-35,<br class="">
WTGC, Hinxton, Cambridge CB10 1SD<br class="">
P: +44 1223 49 44 22<br class="">
F: +44 1223 49 44 68</div>
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