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<span style="font-family: -apple-system-font; line-height: 16px;" class="">Hi Martin,</span>
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<div style="font-family: -apple-system-font; line-height: 16px;" class="">Thank you for getting in touch, I’m afraid this is a known issue that we have seen before. We do have a development task scheduled to update the metadata parsing of DM4 files and it is
our intention to have this issue resolved in a future Bio-Formats release.</div>
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<div style="font-family: -apple-system-font; line-height: 16px;" class="">Thank you for uploading the file to <span style="font-family: Helvetica; line-height: normal;" class="">QA.16940</span>, this will certainly be useful and help aid development.</div>
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<div style="font-family: -apple-system-font; line-height: 16px;" class="">With Thanks,</div>
<div style="font-family: -apple-system-font; line-height: 16px;" class="">David</div>
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<div class="">On 30 Nov 2015, at 16:59, Martin Jones <<a href="mailto:Martin.Jones@crick.ac.uk" class="">Martin.Jones@crick.ac.uk</a>> wrote:</div>
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Hi,
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<div class="">thanks to all for the excellent work! Unfortunately I am still finding a bug in reading DM4 files. The image loads fine in the viewer, but the reported Pixel Height and Voxel Depth dimensions are incorrect. Specifically, the Pixel Height seems
to give the value I’d expect for Voxel Depth (0.05um in the example I uploaded to QA.16940) while the Voxel Depth is reported as 5.0um. The Pixel Width is reported correctly and since the x,y dimensions are the same I have enough information to impose the
correct width, height and depth so I have a workaround for now. It looks as though the raw metadata only records FOV and number of pixels so I guess there’s a calculation being performed somewhere to get the individual pixel size?</div>
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<div class="">I have Bio-Formats version 5.1.6-DEV installed on an up-to-date Fiji installation.</div>
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<div class="">Many thanks!</div>
<div class="">Martin</div>
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<div style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<font color="#919191" face="Trebuchet MS" size="1" class=""><br class="">
Dr. Martin Jones<br class="">
<br class="">
Electron Microscopy STP<br class="">
The Francis Crick Institute<br class="">
Lincoln's Inn Fields Laboratory</font></div>
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<font color="#919191" face="Trebuchet MS" size="1" class="">44 Lincoln’s Inn Fields</font></div>
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<font color="#919191" face="Trebuchet MS" size="1" class="">London WC2A 3LY<br class="">
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<div class=""><font color="#919191" face="Trebuchet MS" size="1" class="">T: +44 (0)20 7269 3346 (Room 1B16)</font></div>
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<font color="#919191" face="Trebuchet MS" size="1" class="">E: <a href="mailto:Martin.Jones@crick.ac.uk" class="">Martin.Jones@crick.ac.uk</a></font></div>
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<font color="#919191" face="Trebuchet MS" size="1" class="">W: <a href="http://www.crick.ac.uk/" class="">www.crick.ac.uk</a></font></div>
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The Francis Crick Institute Limited is a registered charity in England and Wales no. 1140062 and a company registered in England and Wales no. 06885462, with its registered office at 215 Euston Road, London NW1 2BE.
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