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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Hi Simon,<br>
<br>
Thanks for the quick reply.<br>
<br>
Running:<br>
<br>
# yum install java-1.8.0-openjdk<br>
# yum remove java-1.7.0<br>
# yum remove java-1.7.0-openjdk-headless.x86_64<br>
<br>
Followed by restarting omero and omero web solved the problem.<br>
<br>
Below are the details of the server, prior to me applying the fix.<br>
<br>
Thanks for your help,<br>
<br>
Tjelvar<br>
<br>
$ java -version<br>
java version "1.7.0_91"<br>
OpenJDK Runtime Environment (rhel-2.6.2.1.el7_1-x86_64 u91-b00)<br>
OpenJDK 64-Bit Server VM (build 24.91-b01, mixed mode)<br>
<br>
<br>
$ ./bin/omero admin diagnostics<br>
<br>
================================================================================<br>
OMERO Diagnostics 5.1.2-ice35-b45<br>
================================================================================<br>
<br>
WARNING:omero.util.UpgradeCheck:UPGRADE AVAILABLE:Please upgrade to 5.1.4 See http://trac.openmicroscopy.org.uk/omero for the latest version<br>
<br>
Commands: java -version 1.7.0 (/usr/bin/java)<br>
Commands: python -V 2.7.5 (/usr/bin/python)<br>
Commands: icegridnode --version 3.5.1 (/usr/bin/icegridnode)<br>
Commands: icegridadmin --version 3.5.1 (/usr/bin/icegridadmin)<br>
Commands: psql --version 9.4.5 (/usr/bin/psql)<br>
<br>
Server: icegridnode running<br>
Server: Blitz-0 active (pid = 716, enabled)<br>
Server: DropBox active (pid = 728, enabled)<br>
Server: FileServer active (pid = 729, enabled)<br>
Server: Indexer-0 active (pid = 764, enabled)<br>
Server: MonitorServer active (pid = 737, enabled)<br>
Server: OMERO.Glacier2 active (pid = 740, enabled)<br>
Server: OMERO.IceStorm active (pid = 743, enabled)<br>
Server: PixelData-0 active (pid = 749, enabled)<br>
Server: Processor-0 active (pid = 734, enabled)<br>
Server: Tables-0 inactive (disabled)<br>
Server: TestDropBox inactive (enabled)<br>
<br>
Log dir: /home/omero/OMERO.server-5.1.2-ice35-b45/var/log exists<br>
<br>
Log files: Blitz-0.log 366.0 MB errors=597 warnings=1661<br>
Log files: DropBox.log 1.0 KB <br>
Log files: FileServer.log 0.0 KB <br>
Log files: Indexer-0.log 3.0 MB errors=0 warnings=7
<br>
Log files: MonitorServer.log 1.0 KB <br>
Log files: OMEROweb.log 3.0 MB errors=239 warnings=849
<br>
Log files: OMEROweb_request.log 107.0 KB errors=2 warnings=790
<br>
Log files: PixelData-0.log 1.0 MB errors=18 warnings=2
<br>
Log files: Processor-0.log 132.0 KB errors=7 warnings=0
<br>
Log files: Tables-0.log 2.0 KB errors=3 warnings=0
<br>
Log files: TestDropBox.log n/a<br>
Log files: master.err 0.0 KB <br>
Log files: master.out 0.0 KB <br>
Log files: Total size 375.68 MB<br>
<br>
<br>
Log files: Total size 375.68 MB<br>
<br>
Environment:OMERO_HOME=(unset) <br>
Environment:OMERO_NODE=(unset) <br>
Environment:OMERO_MASTER=(unset) <br>
Environment:OMERO_USERDIR=(unset) <br>
Environment:OMERO_TMPDIR=(unset) <br>
Environment:PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/root/bin:/usr/lib/jvm/jre/bin:/usr/share/Ice-3.5.1:/usr/bin:/home/omero/OMERO.server/bin
<br>
Environment:PYTHONPATH=(unset) <br>
Environment:ICE_HOME=/usr/share/Ice-3.5.1 <br>
Environment:LD_LIBRARY_PATH=/usr/share/java:/usr/lib:/usr/local/lib <br>
Environment:DYLD_LIBRARY_PATH=(unset) <br>
<br>
OMERO SSL port:4064 <br>
OMERO TCP port:4063 <br>
OMERO data dir:'/OMERO' Exists? True Is writable? True<br>
OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)<br>
<br>
JVM settings: Blitz -Xmx596m -XX:MaxPermSize=256m -XX:+IgnoreUnrecognizedVMOptions<br>
JVM settings: Indexer -Xmx397m -XX:MaxPermSize=256m -XX:+IgnoreUnrecognizedVMOptions<br>
JVM settings: Pixeldata -Xmx596m -XX:MaxPermSize=256m -XX:+IgnoreUnrecognizedVMOptions<br>
JVM settings: Repository -Xmx397m -XX:MaxPermSize=256m -XX:+IgnoreUnrecognizedVMOptions<br>
<br>
OMERO.web status... [RUNNING] (PID 1006)<br>
<br>
<br>
<br>
$ ./bin/omero config get --hide-password<br>
omero.db.name=omero<br>
omero.db.pass=********<br>
omero.db.user=omero_db_user<br>
omero.ldap.base=****<br>
omero.ldap.config=true<br>
omero.ldap.new_user_group=public<br>
omero.ldap.urls=***<br>
omero.ldap.user_filter=(objectClass=inetOrgPerson)<br>
omero.ldap.user_mapping=omeName=uid,firstName=givenName,lastName=sn,email=mail<br>
<br>
<br>
<div style="font-family: Times New Roman; color: #000000; font-size: 16px">
<hr tabindex="-1">
<div style="direction: ltr;" id="divRpF931480"><font face="Tahoma" size="2" color="#000000"><b>From:</b> ome-users [ome-users-bounces@lists.openmicroscopy.org.uk] on behalf of Simon Li [spli@dundee.ac.uk]<br>
<b>Sent:</b> 12 November 2015 14:06<br>
<b>To:</b> OME User Support List<br>
<b>Subject:</b> Re: [ome-users] trouble with thumbnails in omero web<br>
</font><br>
</div>
<div></div>
<div>
<div dir="ltr">
<div>
<div>Hi Tjelvare<br>
<br>
</div>
What version of Java are you using? We've come across a similar problem before:<br>
<a href="https://trac.openmicroscopy.org/ome/ticket/12612" target="_blank">https://trac.openmicroscopy.org/ome/ticket/12612</a><br>
<br>
But it's reported as being fixed in the latest Java 8:<br>
<a href="https://bugs.launchpad.net/ubuntu/+source/openjdk-8/+bug/1421501" target="_blank">https://bugs.launchpad.net/ubuntu/+source/openjdk-8/+bug/1421501</a><br>
<div>(that bug report is for Ubuntu, but RHEL/CentOS should also have the updated Java)<br>
</div>
<br>
</div>
<div>Could you provide us with the output of:<br>
- omero admin diagnostics<br>
- omero config get --hide-password (just in case it's different from your ansible config)<br>
</div>
<div><br>
</div>
Simon<br>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On 12 November 2015 at 13:28, Tjelvar Olsson (JIC) <span dir="ltr">
<<a href="mailto:Tjelvar.Olsson@jic.ac.uk" target="_blank">Tjelvar.Olsson@jic.ac.uk</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex; border-left:1px #ccc solid; padding-left:1ex">
<div>
<div style="direction:ltr; font-family:Tahoma; color:#000000; font-size:10pt">Hi,<br>
<br>
I cannot currently view thumbnails in: OMERO.web 5.1.2-ice35-b45 running on a CentOS 7 VM, installed using an Ansible playbook developed earlier in the year:<br>
<br>
<a href="https://github.com/JIC-CSB/omero-ansible" target="_blank">https://github.com/JIC-CSB/omero-ansible</a><br>
<br>
I've just realised that I cannot view thumbnails in the web interface. Looking at the OMERO.<br>
<br>
I have appended some output from the OMEROweb.log that seemed relevant.<br>
<br>
Any idea what is wrong with my installation?<br>
<br>
Regards,<br>
<br>
Tjelvare<br>
<br>
<br>
2015-11-12 13:13:00,143 WARNI [ omero.gateway] (proc.24856) debug:4105 InternalException on <class 'omeroweb.webclient.webclient_gateway.OmeroWebSafeCallWrapper'> to <b1d90d71-3f90-4b72<br>
-b3f8-858d3b3ef964omero.api.RenderingEngine> renderCompressed((object #0 (::omero::romio::PlaneDef)<br>
{<br>
slice = 0<br>
x = 0<br>
y = 0<br>
z = 0<br>
t = 0<br>
region = <nil><br>
stride = 0<br>
}, <ServiceOptsDict: {'omero.session.uuid': 'abe5fa60-6b2b-4ae6-b7b5-da97732ee258', 'omero.group': '-1', 'omero.client.uuid': '9984e28e-6cfd-4929-90ab-7815ff95c82f'}>), {})<br>
Traceback (most recent call last):<br>
File "/home/omero/OMERO.server/lib/python/omero/gateway/__init__.py", line 4123, in __call__<br>
return self.f(*args, **kwargs)<br>
File "/home/omero/OMERO.server/lib/python/omero_api_RenderingEngine_ice.py", line 307, in renderCompressed<br>
return _M_omero.api.RenderingEngine._op_renderCompressed.invoke(self, ((_def, ), _ctx))<br>
InternalException: exception ::omero::InternalException<br>
{<br>
serverStackTrace = ome.conditions.InternalException: Wrapped Exception: (java.lang.NoClassDefFoundError):<br>
Could not initialize class com.sun.imageio.plugins.jpeg.JPEGImageWriter<br>
at com.sun.imageio.plugins.jpeg.JPEGImageWriterSpi.createWriterInstance(JPEGImageWriterSpi.java:96)<br>
at javax.imageio.spi.ImageWriterSpi.createWriterInstance(ImageWriterSpi.java:351)<br>
at javax.imageio.ImageIO$ImageWriterIterator.next(ImageIO.java:843)<br>
at javax.imageio.ImageIO$ImageWriterIterator.next(ImageIO.java:827)<br>
at ome.logic.CompressImpl.compressToStream(CompressImpl.java:34)<br>
at ome.services.RenderingBean.renderCompressed(RenderingBean.java:545)<br>
at sun.reflect.GeneratedMethodAccessor1781.invoke(Unknown Source)<br>
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at java.lang.reflect.Method.invoke(Method.java:606)<br>
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)<br>
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)<br>
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)<br>
at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)<br>
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)<br>
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)<br>
at com.sun.proxy.$Proxy107.renderCompressed(Unknown Source)<br>
at sun.reflect.GeneratedMethodAccessor1781.invoke(Unknown Source)<br>
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at java.lang.reflect.Method.invoke(Method.java:606)<br>
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)<br>
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)<br>
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)<br>
at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98)<br>
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)<br>
at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)<br>
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)<br>
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)<br>
at com.sun.proxy.$Proxy107.renderCompressed(Unknown Source)<br>
at sun.reflect.GeneratedMethodAccessor2657.invoke(Unknown Source)<br>
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at java.lang.reflect.Method.invoke(Method.java:606)<br>
at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)<br>
at ome.services.throttling.Callback.run(Callback.java:56)<br>
at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)<br>
at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149)<br>
at ome.services.blitz.impl.RenderingEngineI.renderCompressed_async(RenderingEngineI.java:339)<br>
at sun.reflect.GeneratedMethodAccessor2656.invoke(Unknown Source)<br>
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at java.lang.reflect.Method.invoke(Method.java:606)<br>
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)<br>
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)<br>
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)<br>
at omero.cmd.CallContext.invoke(CallContext.java:78)<br>
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)<br>
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)<br>
at com.sun.proxy.$Proxy109.renderCompressed_async(Unknown Source)<br>
at omero.api._RenderingEngineTie.renderCompressed_async(_RenderingEngineTie.java:276)<br>
at omero.api._RenderingEngineDisp.___renderCompressed(_RenderingEngineDisp.java:575)<br>
at omero.api._RenderingEngineDisp.__dispatch(_RenderingEngineDisp.java:1667)<br>
at IceInternal.Incoming.invoke(Incoming.java:222)<br>
at Ice.ConnectionI.invokeAll(ConnectionI.java:2482)<br>
at Ice.ConnectionI.dispatch(ConnectionI.java:1258)<br>
at Ice.ConnectionI.message(ConnectionI.java:1213)<br>
at IceInternal.ThreadPool.run(ThreadPool.java:321)<br>
at IceInternal.ThreadPool.access$300(ThreadPool.java:12)<br>
at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:693)<br>
at java.lang.Thread.run(Thread.java:745)<br>
<br>
serverExceptionClass = ome.conditions.InternalException<br>
message = Wrapped Exception: (java.lang.NoClassDefFoundError):<br>
Could not initialize class com.sun.imageio.plugins.jpeg.JPEGImageWriter<br>
}<br>
<br>
</div>
<br>
<span style="font-size:10pt">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
</div>
<br>
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<br>
</blockquote>
</div>
<br>
</div>
<br>
<span style="font-size:10pt">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
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