<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
</head>
<body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif;">
<div>
<div>Hi,</div>
<div><br>
</div>
<div>Thank you for reporting your issue and submitting your file.</div>
<div>The issue was reproducible with the latest version of Bio-Formats(5.1.5) and I have created a ticket for the same,</div>
<div><a href="https://trac.openmicroscopy.org/ome/ticket/13085#ticket">https://trac.openmicroscopy.org/ome/ticket/13085#ticket</a></div>
<div>And you have been added to the cc list.</div>
<div><br>
</div>
<div>You will get notified once there is a status change on the ticket. </div>
<div><br>
</div>
<div>For future instances it would be great if you could submit your files to our QA server,</div>
<div><a href="https://www.openmicroscopy.org/qa2/qa/upload/">https://www.openmicroscopy.org/qa2/qa/upload/</a></div>
<div><br>
</div>
<div>Best,</div>
<div>Balaji</div>
<div>
<div><br>
</div>
<div>
<div style="color: rgb(40, 40, 40);"><span style="background-color: rgb(255, 255, 255);">__________________</span></div>
<div style="color: rgb(40, 40, 40);">
<p style="margin-top: 0px; margin-bottom: 0px;">Mr Balaji Ramalingam</p>
<p style="margin-top: 0px; margin-bottom: 0px;">Software Developer<br>
</p>
<p style="margin-top: 0px; margin-bottom: 0px;">OME Team</p>
<p style="margin-top: 0px; margin-bottom: 0px;">College of Life Sciences</p>
<p style="margin-top: 0px; margin-bottom: 0px;">University of Dundee</p>
</div>
</div>
</div>
</div>
<div><br>
</div>
<span id="OLK_SRC_BODY_SECTION">
<div style="font-family:Calibri; font-size:11pt; text-align:left; color:black; BORDER-BOTTOM: medium none; BORDER-LEFT: medium none; PADDING-BOTTOM: 0in; PADDING-LEFT: 0in; PADDING-RIGHT: 0in; BORDER-TOP: #b5c4df 1pt solid; BORDER-RIGHT: medium none; PADDING-TOP: 3pt">
<span style="font-weight:bold">From: </span>Lingfeng Tang <<a href="mailto:lingfengtang1982@gmail.com">lingfengtang1982@gmail.com</a>><br>
<span style="font-weight:bold">Reply-To: </span>OME User Support List <<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Date: </span>Wednesday, 28 October 2015 02:09<br>
<span style="font-weight:bold">To: </span>"<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>" <<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Subject: </span>[ome-users] Wrong metadata for Leica lif files in ImageJ<br>
</div>
<div><br>
</div>
<div>
<div>
<div dir="ltr">
<p style="margin:0in;font-family:Calibri;font-size:11pt">Hi all,</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> </p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">I have been doing timelapse imaging using Leica SP8 confocal for a while. After I got the lif file, I converted it to tiff files. Since the file is huge, we don't want to keep the original lif file. However,
if I save the metadata file created by FiJi or FiJi2, it missed some important information, for example, the laser I used were 488 and 561 nm, but it only shows 633nm which I didn't use. Did anybody else experienced the same problem? Is there any way that
can solve this problem? </p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> </p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">Below is the information of my OS (windows 7), version of FIJI and java:</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"><span style="font-size:11pt"><br>
</span></p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"><span style="font-size:11pt"> </span><span style="font-size:11pt">os.arch => amd64</span><br>
</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> <a href="http://os.name">
os.name</a> => Windows 7</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> os.version => 6.1</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> java.version => 1.6.0_24</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> java.vendor => Sun Microsystems Inc.</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> <a href="http://java.runtime.name">
java.runtime.name</a> => Java(TM) SE Runtime Environment</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> java.runtime.version => 1.6.0_24-b07</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> <a href="http://java.vm.name">
java.vm.name</a> => Java HotSpot(TM) 64-Bit Server VM</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> java.vm.version => 19.1-b02</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> java.vm.vendor => Sun Microsystems Inc.</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> <a href="http://java.vm.info">
java.vm.info</a> => mixed mode</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> <a href="http://java.specification.name">
java.specification.name</a> => Java Platform API Specification</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> java.specification.version => 1.6</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> sun.cpu.endian => little</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> sun.desktop => windows</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> file.separator => \</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> </p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">The up-to-date check says: UP_TO_DATE</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> </p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">I also attached the example lif file with wrong metadata, and the right metadata from Leica software.
</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"><br>
</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">Any ideas, suggestions will be appreciated!</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt"> </p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">Sincerely,</p>
<p style="margin:0in;font-family:Calibri;font-size:11pt">Lingfeng Tang</p>
</div>
</div>
</div>
</span><br>
<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
</body>
</html>