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Hi Felix,

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<div class="">Thank you for reporting the issue and submitting files to be used for testing.</div>

<div class="">We were able to reproduce the issue and I have submitted a fix for review.</div>

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<div class="">You can view and track the changes at the Pull Request below:</div>

<div class=""><a href="https://github.com/openmicroscopy/bioformats/pull/2028" class="">https://github.com/openmicroscopy/bioformats/pull/2028</a></div>

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<div class="">With Thanks,</div>

<div class="">David Gault</div>

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<div class="">On 14 Oct 2015, at 16:39, MEYENHOFER Felix <<a href="mailto:felix.meyenhofer@unifr.ch" class="">felix.meyenhofer@unifr.ch</a>> wrote:</div>

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<div class="">Hi<br class="">

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this is to report that the bio-formats reader seems to mix up the pixels when reading certain series (magnifications) of the Hamamatsu NDPI files. A screen shot of the pixel pattern can be found here:<br class="">

<a href="https://drive.switch.ch/public.php?service=files&t=f0bd77f7c4a96898c339b3cd5b408515" class="">https://drive.switch.ch/public.php?service=files&t=f0bd77f7c4a96898c339b3cd5b408515</a><br class="">

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The file that lead to this can be found here<br class="">

https://drive.switch.ch/public.php?service=files&t=f006627509d481a9af386e1b90efb1eb<br class="">

To reproduce: <br class="">

Plugins > Bio-Formats > Bio-Formats Importer<br class="">

(Hyperstack, XYCZT, split channels)<br class="">

select series 2 (the others are read correctly)<br class="">

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Best, <br class="">

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Felix<br class="">

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http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users<br class="">

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<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>

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