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Hi Sebi,</div>
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Thank you for submitting your file.</div>
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We were able to reproduce the bug locally across all the recent versions of Bio-Formats: 5.0.8 to 5.1.3 (i.e. does not look like a regression). </div>
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A ticket has been created on this regard,</div>
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<a href="https://trac.openmicroscopy.org/ome/ticket/12993">https://trac.openmicroscopy.org/ome/ticket/12993</a></div>
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And you have been added to the cc list.</div>
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We’re intending to have this resolved for the upcoming 5.1.4 release.</div>
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Notifications will be sent to your email id, when there is a status change on the ticket.</div>
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Best,</div>
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Balaji </div>
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<div style="color: rgb(40, 40, 40);"><span style="background-color: rgb(255, 255, 255);">__________________</span></div>
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<p style="margin-top: 0px; margin-bottom: 0px;">Mr Balaji Ramalingam</p>
<p style="margin-top: 0px; margin-bottom: 0px;">Software Developer<br>
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<p style="margin-top: 0px; margin-bottom: 0px;">OME Team</p>
<p style="margin-top: 0px; margin-bottom: 0px;">College of Life Sciences</p>
<p style="margin-top: 0px; margin-bottom: 0px;">University of Dundee</p>
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<span style="font-weight:bold">From: </span>Sebastian Rhode <<a href="mailto:sebrhode@gmail.com">sebrhode@gmail.com</a>><br>
<span style="font-weight:bold">Reply-To: </span>OME User Support List <<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Date: </span>Monday, 17 August 2015 09:13<br>
<span style="font-weight:bold">To: </span>"<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>" <<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Subject: </span>[ome-users] Reading CZI series image returns empty image while all the metadata are ok<br>
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<div>Hi guys,</div>
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<div>I recently files a Fiji Bug regarding the BioFormats Importer, but did not get any response so far. So maybe you are not aware of it yet. The original bug entry can be found here:</div>
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<div> <a href="http://fiji.sc/cgi-bin/bugzilla/show_bug.cgi?id=1139">http://fiji.sc/cgi-bin/bugzilla/show_bug.cgi?id=1139</a><br>
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<div>I attached the 3 screeshos to illustrate the problem.</div>
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<div>Sebi</div>
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<div><img src="cid:ii_idfn9adm0_14f3ab8008f20fc9" width="544" height="496"><br>
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<div><img src="cid:ii_idfn9miu1_14f3ab83e3626001" width="503" height="544"><br>
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<div><img src="cid:ii_idfna0bn2_14f3ab884c2970de" width="544" height="298"><br>
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<div>Original Post on Bugzilla:</div>
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<pre class="bz_comment_text" style="font-size:medium;white-space:pre-wrap;width:50em;color:rgb(0,0,0)">I downloaded today's version of Fiji and tried to open a CZI series file via BioFormats 5.1.3 (contains 8 series) as I did many time before. But when the window opens, where one can select which series to open, all the thumbnails are black (see screenshot).
The XML metadata see to be OK, but the resulting import image contains only zeros. This used to work before without any problems and as far as I remember it wasa even no problem with BF 5.1.3 some days ago...
The CZI image can be found here:
<a href="https://dl.dropboxusercontent.com/u/623476/Tiles1_CH%3D2_Z%3D3_T%3D2_B2_B4_SingleCZI.czi" style="color:rgb(102,51,102)">https://dl.dropboxusercontent.com/u/623476/Tiles1_CH%3D2_Z%3D3_T%3D2_B2_B4_SingleCZI.czi</a></pre>
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<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
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